Expression of RPS12 in pancreatic cancer

PANCREATIC CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

RPS12 is not prognostic in pancreatic cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 959.69
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

987.9

Number of samples

176

Samples

Sample	Description	FPKM
TCGA-HV-A7OP-01A	72 years, male, asian, stage:iib, alive, 978 days	6153.3
TCGA-IB-A7LX-01A	57 years, male, white, stage:iib, dead, 250 days	3304.7
TCGA-IB-7889-01A	86 years, female, white, stage:iib, dead, 481 days	2275.3
TCGA-2J-AABV-01A	74 years, male, white, stage:iib, dead, 652 days	2141.4
TCGA-HZ-A9TJ-01A	70 years, male, white, stage:iv, alive, 603 days	2113.4
TCGA-3A-A9I5-01A	58 years, male, white, alive, 1794 days	2086.3
TCGA-FB-A5VM-01A	74 years, male, white, stage:ib, dead, 498 days	2050.8
TCGA-Q3-A5QY-01A	58 years, male, white, stage:iib, alive, 416 days	2027.1
TCGA-Z5-AAPL-01A	74 years, female, white, stage:iia, alive, 467 days	1926.6
TCGA-IB-A7M4-01A	81 years, male, white, stage:iib, alive, 483 days	1904.0
TCGA-LB-A8F3-01A	64 years, female, black or african american, stage:iia, alive, 379 days	1773.8
TCGA-US-A77J-01A	81 years, female, white, stage:iib, dead, 568 days	1731.2
TCGA-FB-AAPQ-01A	65 years, male, white, stage:iib, dead, 1130 days	1679.9
TCGA-RL-AAAS-01A	60 years, female, white, stage:ib, alive, 9 days	1676.5
TCGA-HZ-7289-01A	77 years, male, white, stage:iib, dead, 661 days	1656.7
TCGA-HZ-A8P1-01A	81 years, male, white, stage:ib, alive, 7 days	1578.2
TCGA-2L-AAQL-01A	82 years, male, white, stage:iib, dead, 292 days	1488.6
TCGA-HZ-A49H-01A	68 years, female, white, stage:iib, alive, 491 days	1487.6
TCGA-HZ-8001-01A	69 years, male, white, stage:iii, alive, 706 days	1483.7
TCGA-IB-7886-01A	80 years, male, white, stage:iib, dead, 123 days	1462.0
TCGA-IB-A6UG-01A	65 years, male, white, stage:iib, dead, 41 days	1459.9
TCGA-FB-AAQ3-01A	65 years, female, white, stage:iib, dead, 31 days	1432.0
TCGA-S4-A8RO-01A	75 years, female, white, stage:iib, alive, 525 days	1400.1
TCGA-IB-AAUR-01A	67 years, male, white, stage:iib, alive, 338 days	1396.4
TCGA-IB-A5ST-01A	64 years, female, white, stage:iib, alive, 635 days	1394.0
TCGA-H8-A6C1-01A	53 years, male, white, stage:iia, alive, 671 days	1349.1
TCGA-IB-AAUP-01A	68 years, male, white, stage:iib, alive, 431 days	1311.7
TCGA-OE-A75W-01A	75 years, male, white, stage:iia, dead, 267 days	1308.1
TCGA-F2-A44G-01A	79 years, female, white, stage:iib, dead, 233 days	1287.2
TCGA-FB-AAPU-01A	41 years, female, asian, stage:iia, dead, 381 days	1275.8
TCGA-FB-AAQ0-01A	68 years, male, white, stage:iia, dead, 473 days	1261.6
TCGA-FB-A78T-01A	71 years, female, white, stage:iib, dead, 375 days	1234.1
TCGA-HZ-7920-01A	71 years, male, white, stage:ib, dead, 236 days	1197.1
TCGA-IB-7888-01A	66 years, female, black or african american, stage:iia, dead, 1332 days	1194.8
TCGA-XD-AAUI-01A	50 years, female, white, stage:iib, dead, 366 days	1171.6
TCGA-3E-AAAY-01A	67 years, male, white, stage:iib, alive, 2285 days	1157.8
TCGA-XD-AAUH-01A	57 years, female, white, stage:iib, alive, 395 days	1157.4
TCGA-3A-A9J0-01A	75 years, male, white, stage:iib, alive, 743 days	1149.8
TCGA-2J-AABP-01A	58 years, female, white, stage:iib, alive, 463 days	1140.7
TCGA-Q3-AA2A-01A	64 years, female, white, stage:ib, alive, 95 days	1125.2
TCGA-F2-A7TX-01A	77 years, male, white, stage:iib, dead, 95 days	1116.7
TCGA-IB-AAUW-01A	63 years, female, white, stage:iib, dead, 230 days	1111.2
TCGA-IB-AAUV-01A	49 years, male, white, stage:iib, alive, 404 days	1110.6
TCGA-IB-7649-01A	73 years, female, stage:iib, dead, 467 days	1105.7
TCGA-2J-AAB9-01A	71 years, female, white, stage:iib, dead, 627 days	1104.7
TCGA-HV-A7OL-01A	70 years, male, asian, stage:iia, alive, 252 days	1094.1
TCGA-US-A776-01A	61 years, male, white, stage:iia, alive, 1216 days	1090.0
TCGA-3E-AAAZ-01A	71 years, male, white, stage:iia, dead, 2182 days	1081.9
TCGA-3A-A9IB-01A	69 years, female, white, stage:iib, dead, 224 days	1065.1
TCGA-XN-A8T5-01A	53 years, female, white, stage:ib, alive, 720 days	1056.4
TCGA-F2-A8YN-01A	76 years, male, white, stage:iia, alive, 517 days	1055.0
TCGA-IB-AAUT-01A	65 years, male, white, stage:iib, alive, 287 days	1046.8
TCGA-HZ-8002-01A	61 years, male, white, stage:iib, dead, 366 days	1036.0
TCGA-2J-AABK-01A	71 years, male, white, stage:iib, alive, 484 days	1034.4
TCGA-FB-AAQ6-01A	85 years, male, white, stage:ia, dead, 244 days	1023.8
TCGA-IB-AAUM-01A	76 years, male, white, stage:iib, alive, 8 days	1010.6
TCGA-FB-AAPZ-01A	54 years, male, white, stage:iib, alive, 716 days	988.5
TCGA-HZ-7923-01A	65 years, male, white, stage:iia, alive, 314 days	985.6
TCGA-2J-AABI-01A	55 years, female, white, stage:iia, alive, 969 days	985.3
TCGA-YY-A8LH-01A	61 years, female, white, stage:iib, alive, 2016 days	971.3
TCGA-XD-AAUG-01A	66 years, female, white, stage:iv, alive, 420 days	968.7
TCGA-3A-A9IO-01A	56 years, male, white, alive, 1942 days	959.9
TCGA-IB-A5SO-01A	71 years, male, white, stage:iib, dead, 365 days	959.5
TCGA-FB-AAPY-01A	71 years, male, white, stage:iib, dead, 1059 days	954.0
TCGA-IB-7891-01A	49 years, female, white, stage:iib, dead, 913 days	953.2
TCGA-2J-AAB8-01A	71 years, male, white, stage:iib, alive, 80 days	950.0
TCGA-IB-A5SQ-01A	56 years, female, white, stage:ib, dead, 219 days	946.0
TCGA-IB-7654-01A	80 years, male, white, stage:iib, dead, 476 days	933.9
TCGA-2L-AAQJ-01A	49 years, female, white, stage:iii, dead, 394 days	929.9
TCGA-HZ-7924-01A	60 years, female, white, stage:iia, alive, 840 days	927.1
TCGA-3A-A9IX-01A	40 years, male, white, stage:ia, alive, 1037 days	924.0
TCGA-HZ-A77O-01A	77 years, female, white, stage:iib, dead, 160 days	921.2
TCGA-IB-7897-01A	54 years, female, white, stage:iib, dead, 486 days	918.0
TCGA-HZ-8519-01A	73 years, male, white, stage:ia, alive, 454 days	916.1
TCGA-FB-AAPS-01A	62 years, female, white, stage:iib, alive, 228 days	911.7
TCGA-2L-AAQI-01A	66 years, male, white, stage:iib, dead, 103 days	911.5
TCGA-F2-6880-01A	70 years, male, white, stage:iib, alive, 289 days	907.5
TCGA-3A-A9IJ-01A	65 years, male, white, stage:ib, alive, 1854 days	907.4
TCGA-F2-7276-01A	64 years, male, white, stage:iib, dead, 216 days	903.3
TCGA-RB-AA9M-01A	43 years, male, white, stage:iib, alive, 286 days	893.1
TCGA-FB-AAPP-01A	71 years, male, white, stage:iib, dead, 485 days	889.4
TCGA-HZ-8637-01A	76 years, female, white, stage:iib, dead, 517 days	883.1
TCGA-IB-AAUQ-01A	50 years, male, white, stage:iib, dead, 183 days	878.8
TCGA-HZ-7926-01A	57 years, male, black or african american, stage:iib, dead, 518 days	875.2
TCGA-IB-7651-01A	64 years, female, white, stage:iib, dead, 603 days	869.7
TCGA-US-A779-01A	54 years, female, white, stage:iib, dead, 511 days	868.6
TCGA-F2-7273-01A	54 years, male, black or african american, stage:iib, dead, 592 days	864.9
TCGA-HZ-A49I-01A	77 years, male, white, stage:iib, dead, 308 days	863.9
TCGA-IB-AAUS-01A	84 years, female, white, stage:iib, alive, 225 days	862.5
TCGA-2J-AABR-01A	60 years, female, white, stage:iia, alive, 438 days	858.8
TCGA-HZ-A77P-01A	77 years, male, white, stage:iib, alive, 330 days	838.7
TCGA-2J-AABF-01A	73 years, male, white, stage:iib, dead, 691 days	834.4
TCGA-FB-AAQ1-01A	49 years, male, white, stage:iib, dead, 123 days	833.9
TCGA-2J-AAB1-01A	65 years, male, white, stage:iib, dead, 66 days	831.9
TCGA-RB-A7B8-01A	81 years, female, white, stage:iib, dead, 466 days	825.8
TCGA-FB-A4P5-01A	69 years, female, white, stage:iib, dead, 179 days	817.2
TCGA-IB-A6UF-01A	63 years, male, white, stage:iib, alive, 666 days	816.4
TCGA-US-A774-01A	76 years, female, white, stage:iib, dead, 695 days	813.9
TCGA-IB-8127-01A	59 years, male, white, stage:iib, alive, 522 days	809.8
TCGA-2J-AAB6-01A	75 years, male, white, stage:iia, dead, 293 days	808.1
TCGA-HZ-7918-01A	72 years, male, white, stage:iib, alive, 969 days	802.2
TCGA-HZ-8317-01A	69 years, female, white, stage:iib, dead, 378 days	802.0
TCGA-2J-AAB4-01A	48 years, male, white, stage:iib, alive, 729 days	794.7
TCGA-IB-7645-01A	44 years, female, stage:iib, dead, 1502 days	794.5
TCGA-3A-A9I7-01A	45 years, male, black or african american, stage:iib, alive, 1323 days	793.5
TCGA-HZ-8005-01A	81 years, male, white, stage:iib, dead, 120 days	788.5
TCGA-HZ-8638-01A	84 years, female, white, stage:ia, dead, 151 days	787.2
TCGA-IB-7644-01A	65 years, female, white, stage:iv, dead, 394 days	780.3
TCGA-LB-A9Q5-01A	63 years, female, white, stage:iib, dead, 313 days	768.8
TCGA-IB-7887-01A	62 years, female, white, stage:iib, dead, 110 days	768.4
TCGA-2J-AABO-01A	43 years, male, white, stage:iib, alive, 440 days	766.4
TCGA-HV-A5A4-01A	72 years, female, asian, stage:iia, alive, 232 days	762.3
TCGA-HZ-7925-01A	66 years, male, white, stage:iib, dead, 614 days	754.4
TCGA-IB-8126-01A	80 years, female, white, stage:iii, alive, 462 days	744.0
TCGA-IB-AAUU-01A	35 years, male, white, stage:iib, alive, 245 days	742.0
TCGA-F2-A44H-01A	65 years, male, white, stage:iia, alive, 586 days	740.2
TCGA-3A-A9IR-01A	64 years, female, white, stage:ib, alive, 1542 days	733.6
TCGA-HZ-A49G-01A	58 years, female, white, stage:iib, alive, 660 days	731.4
TCGA-HZ-A77Q-01A	55 years, female, white, stage:iib, alive, 33 days	728.0
TCGA-US-A77E-01A	73 years, male, white, stage:iib, dead, 430 days	725.3
TCGA-2L-AAQE-01A	56 years, male, white, stage:iib, dead, 684 days	725.2
TCGA-3A-A9IN-01A	62 years, female, white, stage:ib, alive, 2084 days	723.6
TCGA-L1-A7W4-01A	48 years, female, white, stage:iib, dead, 278 days	721.1
TCGA-3A-A9I9-01A	67 years, male, white, stage:iia, dead, 634 days	719.2
TCGA-FB-AAQ2-01A	81 years, female, white, stage:iib, dead, 153 days	719.1
TCGA-IB-A5SP-01A	77 years, male, white, stage:iia, alive, 482 days	717.5
TCGA-YB-A89D-01A	59 years, male, white, stage:iib, alive, 350 days	715.4
TCGA-2L-AAQA-01A	76 years, male, white, stage:iib, dead, 143 days	706.0
TCGA-HZ-7922-01A	61 years, female, white, stage:iib, alive, 4 days	704.8
TCGA-3A-A9IL-01A	39 years, female, white, stage:i, alive, 2741 days	701.8
TCGA-HZ-8315-01A	54 years, female, white, stage:iia, dead, 299 days	701.0
TCGA-IB-7652-01A	49 years, female, asian, stage:iib, alive, 1116 days	699.9
TCGA-HV-A5A5-01A	61 years, female, asian, stage:iib, alive, 289 days	694.5
TCGA-2J-AABT-01A	72 years, female, white, stage:iib, alive, 319 days	694.2
TCGA-PZ-A5RE-01A	44 years, female, white, stage:iib, dead, 470 days	688.4
TCGA-H6-8124-01A	56 years, female, white, stage:iib, alive, 392 days	687.8
TCGA-XD-AAUL-01A	56 years, male, white, stage:iia, alive, 498 days	685.7
TCGA-2J-AABA-01A	55 years, male, white, stage:iib, dead, 607 days	681.9
TCGA-IB-AAUO-01A	64 years, female, white, stage:iib, dead, 239 days	681.9
TCGA-HZ-A4BK-01A	72 years, male, white, stage:iib, alive, 657 days	678.7
TCGA-H6-A45N-01A	88 years, female, white, stage:iib, dead, 421 days	678.3
TCGA-HZ-8636-01A	58 years, female, white, stage:iv, dead, 545 days	675.4
TCGA-IB-7893-01A	64 years, male, white, stage:iia, dead, 117 days	674.0
TCGA-F2-6879-01A	57 years, male, white, stage:iib, dead, 334 days	672.3
TCGA-IB-AAUN-01A	74 years, female, white, stage:ib, dead, 144 days	670.0
TCGA-IB-7646-01A	60 years, male, white, stage:iib, dead, 145 days	661.2
TCGA-IB-7885-01A	78 years, female, white, stage:iib, alive, 1257 days	654.7
TCGA-XN-A8T3-01A	67 years, male, white, stage:ib, alive, 951 days	650.8
TCGA-S4-A8RM-01A	67 years, male, white, stage:iib, alive, 737 days	649.6
TCGA-FB-A4P6-01A	54 years, male, white, stage:iib, alive, 767 days	647.4
TCGA-3A-A9IZ-01A	47 years, male, white, stage:iib, dead, 308 days	631.8
TCGA-3A-A9IH-01A	66 years, female, white, stage:ia, alive, 1021 days	627.1
TCGA-IB-A5SS-01A	64 years, female, white, stage:iib, dead, 460 days	623.0
TCGA-HZ-7919-01A	52 years, female, white, stage:iib, dead, 593 days	617.3
TCGA-2J-AABH-01A	61 years, male, white, stage:iia, alive, 1287 days	614.5
TCGA-3A-A9IC-01A	61 years, female, white, stage:iib, dead, 738 days	606.5
TCGA-HZ-A4BH-01A	75 years, male, white, stage:iib, alive, 194 days	599.8
TCGA-LB-A7SX-01A	74 years, female, black or african american, stage:iib, dead, 393 days	594.8
TCGA-US-A77G-01A	64 years, male, white, stage:iib, dead, 12 days	592.9
TCGA-S4-A8RP-01A	77 years, female, white, stage:iib, dead, 702 days	590.1
TCGA-HV-AA8V-01A	50 years, male, asian, stage:iib, alive, 920 days	587.7
TCGA-FB-A7DR-01A	48 years, male, asian, stage:iia, dead, 353 days	587.7
TCGA-IB-7890-01A	73 years, male, stage:ib, dead, 598 days	579.8
TCGA-HZ-8003-01A	65 years, female, white, stage:iib, dead, 596 days	558.5
TCGA-2J-AABU-01A	56 years, male, white, stage:iib, dead, 277 days	543.8
TCGA-HV-A5A6-01A	65 years, female, asian, stage:iib, dead, 2036 days	541.0
TCGA-YH-A8SY-01A	73 years, female, white, alive, 388 days	536.5
TCGA-3A-A9IU-01A	65 years, male, white, stage:iib, dead, 458 days	531.8
TCGA-2J-AABE-01A	73 years, male, white, stage:iia, alive, 676 days	494.4
TCGA-HV-A5A3-01A	50 years, male, asian, stage:iia, dead, 128 days	472.0
TCGA-HV-AA8X-01A	75 years, female, asian, stage:iib, dead, 532 days	436.5
TCGA-3A-A9IV-01A	59 years, female, white, stage:ib, alive, 1103 days	399.0
TCGA-FB-A545-01A	72 years, female, white, stage:iib, dead, 732 days	393.2
TCGA-M8-A5N4-01A	48 years, female, stage:iia, alive, 584 days	385.0
TCGA-3A-A9IS-01A	67 years, male, white, stage:ib, alive, 998 days	369.2
TCGA-2L-AAQM-01A	52 years, male, white, stage:iib, alive, 1383 days	356.9
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PANCREATIC CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells. Read more	Antibody HPA006124
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Click images for details