Expression of VAMP8 in pancreatic cancer

PANCREATIC CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

VAMP8 is not prognostic in pancreatic cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 92.34
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

131.3

Number of samples

176

Samples

Sample	Description	FPKM
TCGA-HV-A7OP-01A	72 years, male, asian, stage:iib, alive, 978 days	425.2
TCGA-FB-AAQ3-01A	65 years, female, white, stage:iib, dead, 31 days	321.5
TCGA-HV-A7OL-01A	70 years, male, asian, stage:iia, alive, 252 days	319.5
TCGA-OE-A75W-01A	75 years, male, white, stage:iia, dead, 267 days	276.8
TCGA-IB-AAUU-01A	35 years, male, white, stage:iib, alive, 245 days	268.8
TCGA-IB-A5SP-01A	77 years, male, white, stage:iia, alive, 482 days	265.9
TCGA-2L-AAQL-01A	82 years, male, white, stage:iib, dead, 292 days	265.5
TCGA-IB-7889-01A	86 years, female, white, stage:iib, dead, 481 days	253.4
TCGA-FB-A5VM-01A	74 years, male, white, stage:ib, dead, 498 days	243.0
TCGA-XD-AAUL-01A	56 years, male, white, stage:iia, alive, 498 days	236.6
TCGA-2L-AAQJ-01A	49 years, female, white, stage:iii, dead, 394 days	234.8
TCGA-PZ-A5RE-01A	44 years, female, white, stage:iib, dead, 470 days	223.8
TCGA-2J-AAB1-01A	65 years, male, white, stage:iib, dead, 66 days	219.7
TCGA-FB-AAPY-01A	71 years, male, white, stage:iib, dead, 1059 days	215.1
TCGA-US-A779-01A	54 years, female, white, stage:iib, dead, 511 days	213.2
TCGA-2L-AAQE-01A	56 years, male, white, stage:iib, dead, 684 days	209.9
TCGA-3A-A9I9-01A	67 years, male, white, stage:iia, dead, 634 days	205.2
TCGA-IB-AAUO-01A	64 years, female, white, stage:iib, dead, 239 days	204.5
TCGA-YY-A8LH-01A	61 years, female, white, stage:iib, alive, 2016 days	204.5
TCGA-IB-A6UF-01A	63 years, male, white, stage:iib, alive, 666 days	203.6
TCGA-3A-A9IH-01A	66 years, female, white, stage:ia, alive, 1021 days	198.9
TCGA-HV-A5A3-01A	50 years, male, asian, stage:iia, dead, 128 days	194.9
TCGA-Q3-AA2A-01A	64 years, female, white, stage:ib, alive, 95 days	191.9
TCGA-3A-A9I5-01A	58 years, male, white, alive, 1794 days	184.1
TCGA-FB-AAPZ-01A	54 years, male, white, stage:iib, alive, 716 days	183.4
TCGA-HZ-A9TJ-01A	70 years, male, white, stage:iv, alive, 603 days	182.7
TCGA-2J-AABH-01A	61 years, male, white, stage:iia, alive, 1287 days	181.6
TCGA-M8-A5N4-01A	48 years, female, stage:iia, alive, 584 days	179.2
TCGA-2J-AAB4-01A	48 years, male, white, stage:iib, alive, 729 days	178.6
TCGA-HZ-A4BK-01A	72 years, male, white, stage:iib, alive, 657 days	178.6
TCGA-HV-A5A6-01A	65 years, female, asian, stage:iib, dead, 2036 days	176.9
TCGA-3A-A9IU-01A	65 years, male, white, stage:iib, dead, 458 days	173.3
TCGA-F2-6879-01A	57 years, male, white, stage:iib, dead, 334 days	171.5
TCGA-IB-7885-01A	78 years, female, white, stage:iib, alive, 1257 days	169.1
TCGA-IB-A7M4-01A	81 years, male, white, stage:iib, alive, 483 days	165.4
TCGA-RL-AAAS-01A	60 years, female, white, stage:ib, alive, 9 days	159.4
TCGA-2L-AAQI-01A	66 years, male, white, stage:iib, dead, 103 days	157.9
TCGA-LB-A8F3-01A	64 years, female, black or african american, stage:iia, alive, 379 days	156.3
TCGA-2J-AABU-01A	56 years, male, white, stage:iib, dead, 277 days	156.1
TCGA-HZ-7919-01A	52 years, female, white, stage:iib, dead, 593 days	154.6
TCGA-RB-AA9M-01A	43 years, male, white, stage:iib, alive, 286 days	154.5
TCGA-IB-AAUS-01A	84 years, female, white, stage:iib, alive, 225 days	154.3
TCGA-XD-AAUI-01A	50 years, female, white, stage:iib, dead, 366 days	153.8
TCGA-2J-AABK-01A	71 years, male, white, stage:iib, alive, 484 days	153.8
TCGA-HZ-A77Q-01A	55 years, female, white, stage:iib, alive, 33 days	153.3
TCGA-L1-A7W4-01A	48 years, female, white, stage:iib, dead, 278 days	152.8
TCGA-2J-AABO-01A	43 years, male, white, stage:iib, alive, 440 days	152.1
TCGA-F2-A8YN-01A	76 years, male, white, stage:iia, alive, 517 days	149.6
TCGA-IB-8127-01A	59 years, male, white, stage:iib, alive, 522 days	149.0
TCGA-HZ-A77O-01A	77 years, female, white, stage:iib, dead, 160 days	149.0
TCGA-FB-A78T-01A	71 years, female, white, stage:iib, dead, 375 days	148.7
TCGA-HZ-A8P1-01A	81 years, male, white, stage:ib, alive, 7 days	148.4
TCGA-3A-A9IB-01A	69 years, female, white, stage:iib, dead, 224 days	147.8
TCGA-HZ-7918-01A	72 years, male, white, stage:iib, alive, 969 days	147.4
TCGA-2J-AAB9-01A	71 years, female, white, stage:iib, dead, 627 days	146.7
TCGA-Z5-AAPL-01A	74 years, female, white, stage:iia, alive, 467 days	146.1
TCGA-HZ-7926-01A	57 years, male, black or african american, stage:iib, dead, 518 days	145.5
TCGA-3A-A9J0-01A	75 years, male, white, stage:iib, alive, 743 days	143.3
TCGA-LB-A7SX-01A	74 years, female, black or african american, stage:iib, dead, 393 days	142.5
TCGA-US-A77J-01A	81 years, female, white, stage:iib, dead, 568 days	141.9
TCGA-YB-A89D-01A	59 years, male, white, stage:iib, alive, 350 days	141.8
TCGA-IB-7649-01A	73 years, female, stage:iib, dead, 467 days	141.7
TCGA-US-A77G-01A	64 years, male, white, stage:iib, dead, 12 days	140.4
TCGA-IB-A5SS-01A	64 years, female, white, stage:iib, dead, 460 days	139.1
TCGA-IB-AAUN-01A	74 years, female, white, stage:ib, dead, 144 days	138.4
TCGA-IB-7651-01A	64 years, female, white, stage:iib, dead, 603 days	138.3
TCGA-S4-A8RM-01A	67 years, male, white, stage:iib, alive, 737 days	137.9
TCGA-FB-A4P5-01A	69 years, female, white, stage:iib, dead, 179 days	137.1
TCGA-F2-A7TX-01A	77 years, male, white, stage:iib, dead, 95 days	135.8
TCGA-H6-A45N-01A	88 years, female, white, stage:iib, dead, 421 days	135.5
TCGA-FB-AAQ0-01A	68 years, male, white, stage:iia, dead, 473 days	134.9
TCGA-HZ-8315-01A	54 years, female, white, stage:iia, dead, 299 days	134.6
TCGA-FB-AAPP-01A	71 years, male, white, stage:iib, dead, 485 days	133.0
TCGA-HZ-8001-01A	69 years, male, white, stage:iii, alive, 706 days	132.4
TCGA-FB-AAQ6-01A	85 years, male, white, stage:ia, dead, 244 days	131.7
TCGA-IB-AAUT-01A	65 years, male, white, stage:iib, alive, 287 days	130.9
TCGA-2J-AABF-01A	73 years, male, white, stage:iib, dead, 691 days	130.8
TCGA-IB-7644-01A	65 years, female, white, stage:iv, dead, 394 days	129.9
TCGA-HZ-8637-01A	76 years, female, white, stage:iib, dead, 517 days	129.4
TCGA-Q3-A5QY-01A	58 years, male, white, stage:iib, alive, 416 days	128.7
TCGA-2J-AABI-01A	55 years, female, white, stage:iia, alive, 969 days	127.6
TCGA-FB-AAPU-01A	41 years, female, asian, stage:iia, dead, 381 days	126.9
TCGA-3E-AAAY-01A	67 years, male, white, stage:iib, alive, 2285 days	126.1
TCGA-HZ-8638-01A	84 years, female, white, stage:ia, dead, 151 days	126.1
TCGA-F2-A44G-01A	79 years, female, white, stage:iib, dead, 233 days	124.6
TCGA-3A-A9I7-01A	45 years, male, black or african american, stage:iib, alive, 1323 days	124.4
TCGA-FB-AAQ2-01A	81 years, female, white, stage:iib, dead, 153 days	124.2
TCGA-US-A77E-01A	73 years, male, white, stage:iib, dead, 430 days	124.0
TCGA-IB-AAUQ-01A	50 years, male, white, stage:iib, dead, 183 days	123.9
TCGA-IB-A5ST-01A	64 years, female, white, stage:iib, alive, 635 days	123.6
TCGA-IB-7886-01A	80 years, male, white, stage:iib, dead, 123 days	123.2
TCGA-2J-AABR-01A	60 years, female, white, stage:iia, alive, 438 days	123.0
TCGA-H8-A6C1-01A	53 years, male, white, stage:iia, alive, 671 days	121.7
TCGA-IB-7891-01A	49 years, female, white, stage:iib, dead, 913 days	121.6
TCGA-IB-AAUP-01A	68 years, male, white, stage:iib, alive, 431 days	121.1
TCGA-IB-A7LX-01A	57 years, male, white, stage:iib, dead, 250 days	120.6
TCGA-2J-AABE-01A	73 years, male, white, stage:iia, alive, 676 days	120.2
TCGA-XN-A8T3-01A	67 years, male, white, stage:ib, alive, 951 days	119.9
TCGA-RB-A7B8-01A	81 years, female, white, stage:iib, dead, 466 days	118.4
TCGA-HV-A5A5-01A	61 years, female, asian, stage:iib, alive, 289 days	117.7
TCGA-FB-AAQ1-01A	49 years, male, white, stage:iib, dead, 123 days	117.5
TCGA-HV-AA8V-01A	50 years, male, asian, stage:iib, alive, 920 days	115.3
TCGA-S4-A8RP-01A	77 years, female, white, stage:iib, dead, 702 days	115.1
TCGA-FB-AAPQ-01A	65 years, male, white, stage:iib, dead, 1130 days	114.7
TCGA-IB-AAUW-01A	63 years, female, white, stage:iib, dead, 230 days	114.0
TCGA-3A-A9IZ-01A	47 years, male, white, stage:iib, dead, 308 days	113.5
TCGA-2J-AAB6-01A	75 years, male, white, stage:iia, dead, 293 days	112.3
TCGA-HZ-A49G-01A	58 years, female, white, stage:iib, alive, 660 days	111.5
TCGA-HV-AA8X-01A	75 years, female, asian, stage:iib, dead, 532 days	111.0
TCGA-IB-A6UG-01A	65 years, male, white, stage:iib, dead, 41 days	110.5
TCGA-IB-7646-01A	60 years, male, white, stage:iib, dead, 145 days	110.2
TCGA-HZ-7924-01A	60 years, female, white, stage:iia, alive, 840 days	110.0
TCGA-3E-AAAZ-01A	71 years, male, white, stage:iia, dead, 2182 days	109.6
TCGA-HZ-A4BH-01A	75 years, male, white, stage:iib, alive, 194 days	107.8
TCGA-US-A774-01A	76 years, female, white, stage:iib, dead, 695 days	107.0
TCGA-US-A776-01A	61 years, male, white, stage:iia, alive, 1216 days	106.5
TCGA-FB-A545-01A	72 years, female, white, stage:iib, dead, 732 days	106.4
TCGA-FB-A4P6-01A	54 years, male, white, stage:iib, alive, 767 days	106.3
TCGA-HZ-8002-01A	61 years, male, white, stage:iib, dead, 366 days	106.3
TCGA-2J-AABV-01A	74 years, male, white, stage:iib, dead, 652 days	106.3
TCGA-HZ-A49H-01A	68 years, female, white, stage:iib, alive, 491 days	106.3
TCGA-FB-A7DR-01A	48 years, male, asian, stage:iia, dead, 353 days	106.1
TCGA-2L-AAQA-01A	76 years, male, white, stage:iib, dead, 143 days	105.0
TCGA-IB-A5SQ-01A	56 years, female, white, stage:ib, dead, 219 days	104.2
TCGA-HZ-A49I-01A	77 years, male, white, stage:iib, dead, 308 days	104.1
TCGA-XN-A8T5-01A	53 years, female, white, stage:ib, alive, 720 days	103.1
TCGA-YH-A8SY-01A	73 years, female, white, alive, 388 days	102.9
TCGA-2J-AAB8-01A	71 years, male, white, stage:iib, alive, 80 days	102.8
TCGA-IB-7645-01A	44 years, female, stage:iib, dead, 1502 days	99.1
TCGA-3A-A9IC-01A	61 years, female, white, stage:iib, dead, 738 days	98.8
TCGA-IB-7654-01A	80 years, male, white, stage:iib, dead, 476 days	98.3
TCGA-F2-7276-01A	64 years, male, white, stage:iib, dead, 216 days	98.3
TCGA-3A-A9IX-01A	40 years, male, white, stage:ia, alive, 1037 days	97.1
TCGA-HZ-7922-01A	61 years, female, white, stage:iib, alive, 4 days	96.4
TCGA-IB-7887-01A	62 years, female, white, stage:iib, dead, 110 days	95.4
TCGA-S4-A8RO-01A	75 years, female, white, stage:iib, alive, 525 days	93.9
TCGA-HZ-8636-01A	58 years, female, white, stage:iv, dead, 545 days	93.4
TCGA-2J-AABP-01A	58 years, female, white, stage:iib, alive, 463 days	93.0
TCGA-IB-AAUR-01A	67 years, male, white, stage:iib, alive, 338 days	92.8
TCGA-LB-A9Q5-01A	63 years, female, white, stage:iib, dead, 313 days	92.4
TCGA-IB-A5SO-01A	71 years, male, white, stage:iib, dead, 365 days	92.3
TCGA-IB-7652-01A	49 years, female, asian, stage:iib, alive, 1116 days	89.6
TCGA-HZ-7923-01A	65 years, male, white, stage:iia, alive, 314 days	88.0
TCGA-IB-7890-01A	73 years, male, stage:ib, dead, 598 days	86.7
TCGA-HZ-8317-01A	69 years, female, white, stage:iib, dead, 378 days	86.6
TCGA-HV-A5A4-01A	72 years, female, asian, stage:iia, alive, 232 days	83.6
TCGA-F2-7273-01A	54 years, male, black or african american, stage:iib, dead, 592 days	82.4
TCGA-HZ-8005-01A	81 years, male, white, stage:iib, dead, 120 days	82.1
TCGA-HZ-A77P-01A	77 years, male, white, stage:iib, alive, 330 days	81.7
TCGA-XD-AAUH-01A	57 years, female, white, stage:iib, alive, 395 days	79.9
TCGA-F2-A44H-01A	65 years, male, white, stage:iia, alive, 586 days	77.6
TCGA-H6-8124-01A	56 years, female, white, stage:iib, alive, 392 days	75.6
TCGA-HZ-7920-01A	71 years, male, white, stage:ib, dead, 236 days	73.8
TCGA-IB-AAUM-01A	76 years, male, white, stage:iib, alive, 8 days	71.9
TCGA-2J-AABT-01A	72 years, female, white, stage:iib, alive, 319 days	71.3
TCGA-FB-AAPS-01A	62 years, female, white, stage:iib, alive, 228 days	70.6
TCGA-HZ-7925-01A	66 years, male, white, stage:iib, dead, 614 days	70.0
TCGA-IB-7888-01A	66 years, female, black or african american, stage:iia, dead, 1332 days	68.7
TCGA-IB-7897-01A	54 years, female, white, stage:iib, dead, 486 days	66.3
TCGA-2J-AABA-01A	55 years, male, white, stage:iib, dead, 607 days	66.1
TCGA-HZ-8519-01A	73 years, male, white, stage:ia, alive, 454 days	64.3
TCGA-IB-7893-01A	64 years, male, white, stage:iia, dead, 117 days	62.3
TCGA-IB-AAUV-01A	49 years, male, white, stage:iib, alive, 404 days	60.5
TCGA-HZ-8003-01A	65 years, female, white, stage:iib, dead, 596 days	59.6
TCGA-3A-A9IR-01A	64 years, female, white, stage:ib, alive, 1542 days	56.5
TCGA-IB-8126-01A	80 years, female, white, stage:iii, alive, 462 days	54.7
TCGA-3A-A9IJ-01A	65 years, male, white, stage:ib, alive, 1854 days	53.2
TCGA-HZ-7289-01A	77 years, male, white, stage:iib, dead, 661 days	53.1
TCGA-XD-AAUG-01A	66 years, female, white, stage:iv, alive, 420 days	49.2
TCGA-F2-6880-01A	70 years, male, white, stage:iib, alive, 289 days	43.4
TCGA-2L-AAQM-01A	52 years, male, white, stage:iib, alive, 1383 days	34.9
TCGA-3A-A9IO-01A	56 years, male, white, alive, 1942 days	32.7
TCGA-3A-A9IN-01A	62 years, female, white, stage:ib, alive, 2084 days	27.8
TCGA-3A-A9IL-01A	39 years, female, white, stage:i, alive, 2741 days	27.7
TCGA-3A-A9IV-01A	59 years, female, white, stage:ib, alive, 1103 days	20.3
TCGA-3A-A9IS-01A	67 years, male, white, stage:ib, alive, 998 days	15.9
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PANCREATIC CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells. Read more	Antibody HPA006882	Antibody CAB037132	Antibody CAB037147
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Click images for details