Expression of MT-ND2 in testis cancer - The Human Protein Atlas

TESTIS CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

MT-ND2 is not prognostic in testis cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 2565.55
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

3395.9

Number of samples

134

Samples

Sample	Description	FPKM
TCGA-XE-AAOL-01A	38 years, male, black or african american, stage:i, alive, 13 days	36804.3
TCGA-ZM-AA05-01A	36 years, male, white, stage:iic, alive, 1126 days	25878.7
TCGA-ZM-AA0F-01A	35 years, male, white, stage:ia, alive, 681 days	19299.3
TCGA-ZM-AA0H-01A	50 years, male, white, stage:is, alive, 1736 days	15754.5
TCGA-ZM-AA0N-01A	44 years, male, white, stage:ib, alive, 634 days	14152.2
TCGA-ZM-AA06-01A	45 years, male, white, stage:ib, alive, 1498 days	13994.5
TCGA-ZM-AA0E-01A	39 years, male, white, stage:ia, alive, 811 days	12829.1
TCGA-XE-AAO6-01A	47 years, male, white, stage:ia, alive, 240 days	11382.6
TCGA-ZM-AA0B-01A	32 years, male, white, stage:ia, alive, 838 days	10147.4
TCGA-2G-AAGG-01A	20 years, male, white, stage:iiic, alive, 2611 days	7343.5
TCGA-ZM-AA0D-01A	34 years, male, white, stage:ia, alive, 848 days	6204.7
TCGA-XE-AAO4-01A	40 years, male, white, stage:ia, alive, 367 days	5461.4
TCGA-4K-AAAL-01A	31 years, male, white, stage:is, alive, 483 days	5158.8
TCGA-2G-AAKD-01A	18 years, male, white, stage:iii, alive, 6340 days	4656.8
TCGA-YU-A90S-01A	26 years, male, white, stage:ia, alive, 971 days	4645.0
TCGA-WZ-A8D5-01A	38 years, male, white, alive, 774 days	4576.5
TCGA-XE-A8H4-01A	23 years, male, white, stage:ia, alive, 559 days	4188.4
TCGA-2G-AAGV-01A	23 years, male, white, alive, 4527 days	4158.0
TCGA-2G-AAG6-01A	24 years, male, white, stage:is, alive, 2231 days	3980.5
TCGA-VF-A8A9-01A	31 years, male, white, stage:ia, alive, 1119 days	3566.5
TCGA-2G-AAFE-01A	37 years, male, white, stage:iia, alive, 4702 days	3537.6
TCGA-XE-AAOC-01A	31 years, male, white, stage:ia, alive, 270 days	3515.7
TCGA-2G-AAH0-01A	30 years, male, white, stage:is, alive, 5477 days	3437.3
TCGA-2G-AAGF-01A	28 years, male, white, stage:is, alive, 2734 days	3411.7
TCGA-VF-A8AE-01A	39 years, male, white, stage:ia, alive, 727 days	3393.6
TCGA-2G-AAGA-01A	38 years, male, white, stage:iia, alive, 2439 days	3353.9
TCGA-2G-AAG3-01A	53 years, male, white, stage:is, alive, 1593 days	3351.4
TCGA-2G-AAFL-01A	35 years, male, white, stage:ib, alive, 750 days	3337.8
TCGA-2G-AAGZ-01A	27 years, male, white, stage:iiia, alive, 5233 days	3298.3
TCGA-XY-A89B-01A	35 years, male, white, stage:ia, alive, 471 days	3248.7
TCGA-2G-AAFY-01A	24 years, male, white, stage:iia, alive, 1099 days	3141.6
TCGA-XE-AAOD-01A	39 years, male, white, stage:ib, alive, 2058 days	3133.9
TCGA-2G-AAGW-01A	38 years, male, white, stage:is, alive, 4899 days	3105.0
TCGA-YU-A90Y-01A	23 years, male, black or african american, stage:iiic, dead, 17 days	3045.2
TCGA-VF-A8AB-01A	31 years, male, black or african american, stage:ia, alive, 760 days	3036.7
TCGA-2G-AAFZ-01A	32 years, male, white, stage:iii, alive, 1353 days	3027.3
TCGA-4K-AA1I-01A	26 years, male, white, stage:ia, alive, 3 days	2965.4
TCGA-2G-AAFN-01A	26 years, male, white, stage:iiib, alive, 773 days	2961.8
TCGA-2G-AAG8-01A	21 years, male, white, stage:ib, alive, 2289 days	2864.1
TCGA-YU-A90W-01A	45 years, male, white, stage:ia, alive, 1113 days	2834.9
TCGA-2G-AAKL-01A	26 years, male, white, stage:ii, alive, 7023 days	2807.6
TCGA-WZ-A7V4-01A	28 years, male, white, stage:i, alive, 894 days	2806.8
TCGA-2G-AAG9-01A	25 years, male, white, stage:iiib, alive, 2234 days	2774.1
TCGA-XE-AANJ-01A	39 years, male, white, stage:is, alive, 2007 days	2752.0
TCGA-2G-AAFV-01A	31 years, male, white, stage:is, alive, 1389 days	2747.9
TCGA-YU-AA4L-01A	27 years, male, black or african american, stage:iiic, alive, 1573 days	2744.5
TCGA-2G-AAFM-01A	31 years, male, white, stage:iia, alive, 503 days	2695.9
TCGA-2G-AAF8-01A	33 years, male, white, stage:ia, alive, 3911 days	2692.7
TCGA-2G-AAGP-01A	33 years, male, white, stage:iia, alive, 4018 days	2691.6
TCGA-2G-AAKM-01A	14 years, male, white, stage:ii, dead, 6972 days	2683.8
TCGA-2G-AAG0-01A	23 years, male, white, stage:is, alive, 1529 days	2640.6
TCGA-2G-AAGO-01A	41 years, male, white, stage:is, alive, 4026 days	2628.1
TCGA-2G-AAL7-01A	32 years, male, white, stage:is, alive, 3991 days	2619.3
TCGA-XE-A8H5-01A	29 years, male, stage:is, alive, 1217 days	2618.2
TCGA-2G-AAH8-01A	45 years, male, white, stage:iiic, alive, 2248 days	2596.6
TCGA-XE-AAOB-01A	27 years, male, white, stage:is, dead, 513 days	2567.7
TCGA-X3-A8G4-01A	33 years, male, white, stage:is, alive, 856 days	2563.4
TCGA-2G-AAFH-01A	38 years, male, white, stage:iib, alive, 1375 days	2543.9
TCGA-2G-AALP-01A	43 years, male, white, stage:iiib, alive, 2645 days	2492.2
TCGA-2G-AAKG-01A	22 years, male, white, stage:i, alive, 6598 days	2469.8
TCGA-2G-AAG7-01A	33 years, male, white, stage:is, alive, 2475 days	2461.1
TCGA-YU-A94I-01A	66 years, male, stage:ia, alive, 536 days	2448.5
TCGA-XE-AAOJ-01A	24 years, male, white, stage:is, alive, 1550 days	2390.2
TCGA-VF-A8AD-01A	36 years, male, white, stage:ib, alive, 1006 days	2331.4
TCGA-2G-AAFO-01A	33 years, male, white, stage:iia, alive, 685 days	2305.6
TCGA-SN-A6IS-01A	26 years, male, white, stage:is, alive, 496 days	2296.0
TCGA-4K-AA1H-01A	26 years, male, white, stage:ia, alive, 518 days	2290.8
TCGA-VF-A8A8-01A	18 years, male, white, stage:ia, alive, 1131 days	2290.5
TCGA-S6-A8JY-01A	27 years, male, white, stage:is, alive, 278 days	2270.1
TCGA-XE-A8H1-01A	24 years, male, white, stage:is, alive, 209 days	2241.5
TCGA-SN-A84W-01A	30 years, male, white, stage:is, alive, 293 days	2165.5
TCGA-2X-A9D5-01A	49 years, male, white, stage:i, alive, 435 days	2162.0
TCGA-XY-A8S3-01B	24 years, male, white, stage:is, alive, 843 days	2161.5
TCGA-2G-AAGJ-01A	28 years, male, black or african american, stage:ia, alive, 2938 days	2127.9
TCGA-YU-A90P-01A	25 years, male, white, stage:ia, alive, 2069 days	2124.2
TCGA-2G-AAH2-01A	20 years, male, white, stage:is, alive, 6060 days	2123.6
TCGA-2G-AAGM-01A	51 years, male, white, stage:is, alive, 3891 days	2121.9
TCGA-2G-AAGY-01A	28 years, male, white, stage:is, alive, 5329 days	2106.2
TCGA-2G-AAGE-01A	21 years, male, white, stage:is, alive, 2478 days	2083.1
TCGA-WZ-A7V5-01A	27 years, male, white, stage:i, alive, 1061 days	2076.9
TCGA-S6-A8JX-01A	27 years, male, white, stage:ib, alive, 552 days	2029.4
TCGA-WZ-A7V3-01A	20 years, male, white, stage:i, alive, 753 days	2025.5
TCGA-XY-A9T9-01A	37 years, male, white, stage:is, alive, 281 days	1916.2
TCGA-2G-AAHT-01A	32 years, male, white, stage:is, alive, 542 days	1854.1
TCGA-2G-AAFG-01A	30 years, male, white, stage:is, alive, 6183 days	1853.7
TCGA-XY-A8S2-01A	67 years, male, white, stage:i, alive, 672 days	1849.5
TCGA-2G-AAKH-01A	19 years, male, white, stage:ii, alive, 6862 days	1848.3
TCGA-2G-AAGI-01A	33 years, male, white, stage:is, alive, 3137 days	1798.0
TCGA-YU-AA61-01A	29 years, male, white, stage:is, alive, 864 days	1773.6
TCGA-YU-A94D-01A	28 years, male, stage:iiib, alive, 2167 days	1758.0
TCGA-2X-A9D6-01A	42 years, male, white, stage:i, alive, 607 days	1753.9
TCGA-SB-A6J6-01A	22 years, male, white, stage:ia, alive, 413 days	1747.9
TCGA-2G-AAGC-01A	28 years, male, white, stage:is, alive, 2585 days	1745.3
TCGA-W4-A7U4-01A	23 years, male, white, alive, 738 days	1744.1
TCGA-XE-A9SE-01A	35 years, male, white, stage:ia, alive, 708 days	1725.6
TCGA-2G-AAFJ-01A	23 years, male, asian, alive, 792 days	1703.4
TCGA-2G-AAG5-01A	36 years, male, white, stage:is, alive, 2299 days	1699.5
TCGA-2G-AAHG-01A	25 years, male, white, stage:i, alive, 1819 days	1697.0
TCGA-2G-AAEX-01A	38 years, male, white, stage:is, alive, 1259 days	1683.0
TCGA-XE-AAOF-01A	50 years, male, asian, stage:ia, alive, 1268 days	1659.1
TCGA-4K-AA1G-01A	34 years, male, white, stage:is, alive, 436 days	1658.9
TCGA-VF-A8AA-01A	51 years, male, white, stage:i, alive, 1146 days	1608.4
TCGA-S6-A8JW-01A	37 years, male, white, stage:is, alive, 698 days	1591.9
TCGA-XE-AANV-01A	52 years, male, stage:ib, alive, 1701 days	1589.0
TCGA-2G-AAGS-01A	39 years, male, white, stage:iiib, alive, 4816 days	1586.2
TCGA-YU-A912-01A	34 years, male, black or african american, stage:iiic, alive, 866 days	1574.8
TCGA-SO-A8JP-01A	29 years, male, white, stage:i, alive, 540 days	1560.1
TCGA-2G-AAHC-01A	33 years, male, white, stage:is, alive, 5539 days	1539.8
TCGA-W4-A7U3-01A	26 years, male, white, alive, 149 days	1529.2
TCGA-XE-AANR-01A	24 years, male, white, stage:i, alive, 14 days	1521.6
TCGA-XE-AANI-01A	37 years, male, white, stage:is, alive, 1041 days	1517.4
TCGA-2G-AAH3-01A	20 years, male, white, stage:i, alive, 1822 days	1490.1
TCGA-2G-AAFI-01A	41 years, male, white, stage:ib, alive, 675 days	1489.2
TCGA-YU-A90Q-01A	21 years, male, stage:ib, alive, 1964 days	1460.3
TCGA-2G-AAHA-01A	48 years, male, white, stage:ib, alive, 3349 days	1374.4
TCGA-2G-AAGN-01A	41 years, male, white, stage:iiib, alive, 3656 days	1340.3
TCGA-2G-AAHL-01A	26 years, male, white, stage:i, alive, 7081 days	1339.1
TCGA-2G-AAGX-01A	22 years, male, white, stage:ia, alive, 5514 days	1296.7
TCGA-2G-AAH4-01A	34 years, male, white, stage:ii, alive, 6210 days	1295.8
TCGA-SN-A84X-01A	21 years, male, white, stage:is, alive, 312 days	1275.7
TCGA-VF-A8AC-01A	29 years, male, white, stage:ia, alive, 1083 days	1263.6
TCGA-2G-AAGT-01A	30 years, male, white, stage:is, alive, 4406 days	1255.7
TCGA-2G-AAF4-01A	30 years, male, white, stage:i, alive, 2315 days	1239.2
TCGA-2G-AAHN-01A	32 years, male, white, stage:i, alive, 6445 days	1204.3
TCGA-W4-A7U2-01A	26 years, male, white, alive, 1263 days	1147.0
TCGA-SB-A76C-01A	38 years, male, white, alive, 42 days	1033.7
TCGA-SN-A84Y-01A	18 years, male, white, stage:is, alive, 524 days	1021.4
TCGA-2G-AAGK-01A	20 years, male, white, stage:is, alive, 3621 days	935.4
TCGA-XE-AAO3-01A	33 years, male, asian, stage:i, alive, 2857 days	890.9
TCGA-2G-AAEW-01A	31 years, male, white, stage:is, dead, 618 days	852.6
TCGA-2G-AAHP-01A	31 years, male, white, stage:is, alive, 5667 days	773.3
TCGA-2G-AAF1-01A	28 years, male, asian, stage:is, alive, 1403 days	722.6
TCGA-2G-AAF6-01A	28 years, male, white, stage:is, alive, 3491 days	689.1
TCGA-2G-AAL5-01A	31 years, male, white, stage:i, alive, 7437 days	618.3
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TESTIS CANCER - Protein expressionⁱ

Pending cancer tissue analysis