Expression of MT-ND3 in pancreatic cancer

PANCREATIC CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

MT-ND3 is not prognostic in pancreatic cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 2661.4
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

4473.3

Number of samples

176

Samples

Sample	Description	FPKM
TCGA-FB-AAQ3-01A	65 years, female, white, stage:iib, dead, 31 days	16556.0
TCGA-2L-AAQM-01A	52 years, male, white, stage:iib, alive, 1383 days	15282.2
TCGA-3A-A9IV-01A	59 years, female, white, stage:ib, alive, 1103 days	14260.7
TCGA-HV-A7OP-01A	72 years, male, asian, stage:iib, alive, 978 days	11070.1
TCGA-LB-A7SX-01A	74 years, female, black or african american, stage:iib, dead, 393 days	10835.7
TCGA-US-A779-01A	54 years, female, white, stage:iib, dead, 511 days	9711.2
TCGA-Q3-AA2A-01A	64 years, female, white, stage:ib, alive, 95 days	9341.8
TCGA-FB-AAPY-01A	71 years, male, white, stage:iib, dead, 1059 days	9329.7
TCGA-2J-AABK-01A	71 years, male, white, stage:iib, alive, 484 days	9323.2
TCGA-2J-AABH-01A	61 years, male, white, stage:iia, alive, 1287 days	9222.8
TCGA-HZ-A49H-01A	68 years, female, white, stage:iib, alive, 491 days	8452.2
TCGA-H8-A6C1-01A	53 years, male, white, stage:iia, alive, 671 days	8435.5
TCGA-FB-AAQ1-01A	49 years, male, white, stage:iib, dead, 123 days	8248.9
TCGA-2L-AAQL-01A	82 years, male, white, stage:iib, dead, 292 days	7997.3
TCGA-HV-A5A6-01A	65 years, female, asian, stage:iib, dead, 2036 days	7918.3
TCGA-2J-AABT-01A	72 years, female, white, stage:iib, alive, 319 days	7905.5
TCGA-HV-A5A5-01A	61 years, female, asian, stage:iib, alive, 289 days	7778.1
TCGA-IB-7649-01A	73 years, female, stage:iib, dead, 467 days	7622.0
TCGA-2L-AAQJ-01A	49 years, female, white, stage:iii, dead, 394 days	7620.9
TCGA-F2-A44H-01A	65 years, male, white, stage:iia, alive, 586 days	7550.1
TCGA-3A-A9IL-01A	39 years, female, white, stage:i, alive, 2741 days	7246.4
TCGA-Q3-A5QY-01A	58 years, male, white, stage:iib, alive, 416 days	7230.6
TCGA-FB-AAPP-01A	71 years, male, white, stage:iib, dead, 485 days	7080.7
TCGA-HZ-A8P1-01A	81 years, male, white, stage:ib, alive, 7 days	7048.1
TCGA-3A-A9IN-01A	62 years, female, white, stage:ib, alive, 2084 days	6950.5
TCGA-IB-A5SP-01A	77 years, male, white, stage:iia, alive, 482 days	6851.8
TCGA-F2-A8YN-01A	76 years, male, white, stage:iia, alive, 517 days	6765.2
TCGA-RB-A7B8-01A	81 years, female, white, stage:iib, dead, 466 days	6624.9
TCGA-3E-AAAY-01A	67 years, male, white, stage:iib, alive, 2285 days	6520.8
TCGA-FB-AAPU-01A	41 years, female, asian, stage:iia, dead, 381 days	6499.1
TCGA-HZ-A77P-01A	77 years, male, white, stage:iib, alive, 330 days	6398.1
TCGA-HZ-8637-01A	76 years, female, white, stage:iib, dead, 517 days	6178.7
TCGA-F2-A44G-01A	79 years, female, white, stage:iib, dead, 233 days	6076.6
TCGA-XD-AAUH-01A	57 years, female, white, stage:iib, alive, 395 days	6074.5
TCGA-HZ-8519-01A	73 years, male, white, stage:ia, alive, 454 days	6070.6
TCGA-RL-AAAS-01A	60 years, female, white, stage:ib, alive, 9 days	5957.8
TCGA-FB-AAPZ-01A	54 years, male, white, stage:iib, alive, 716 days	5909.4
TCGA-PZ-A5RE-01A	44 years, female, white, stage:iib, dead, 470 days	5901.9
TCGA-3A-A9I9-01A	67 years, male, white, stage:iia, dead, 634 days	5770.3
TCGA-2L-AAQE-01A	56 years, male, white, stage:iib, dead, 684 days	5578.5
TCGA-HZ-8315-01A	54 years, female, white, stage:iia, dead, 299 days	5544.9
TCGA-FB-AAQ2-01A	81 years, female, white, stage:iib, dead, 153 days	5465.7
TCGA-FB-AAPS-01A	62 years, female, white, stage:iib, alive, 228 days	5462.0
TCGA-M8-A5N4-01A	48 years, female, stage:iia, alive, 584 days	5453.5
TCGA-F2-6880-01A	70 years, male, white, stage:iib, alive, 289 days	5401.3
TCGA-3A-A9IS-01A	67 years, male, white, stage:ib, alive, 998 days	5358.5
TCGA-HV-AA8V-01A	50 years, male, asian, stage:iib, alive, 920 days	5248.6
TCGA-FB-A7DR-01A	48 years, male, asian, stage:iia, dead, 353 days	5190.1
TCGA-HZ-7289-01A	77 years, male, white, stage:iib, dead, 661 days	5147.6
TCGA-2J-AABE-01A	73 years, male, white, stage:iia, alive, 676 days	5134.9
TCGA-2J-AAB1-01A	65 years, male, white, stage:iib, dead, 66 days	5113.8
TCGA-2J-AABA-01A	55 years, male, white, stage:iib, dead, 607 days	5079.8
TCGA-2J-AABO-01A	43 years, male, white, stage:iib, alive, 440 days	5026.4
TCGA-HZ-8317-01A	69 years, female, white, stage:iib, dead, 378 days	4985.4
TCGA-XN-A8T5-01A	53 years, female, white, stage:ib, alive, 720 days	4932.9
TCGA-IB-7889-01A	86 years, female, white, stage:iib, dead, 481 days	4894.8
TCGA-US-A77E-01A	73 years, male, white, stage:iib, dead, 430 days	4820.4
TCGA-XD-AAUG-01A	66 years, female, white, stage:iv, alive, 420 days	4713.0
TCGA-IB-AAUR-01A	67 years, male, white, stage:iib, alive, 338 days	4684.2
TCGA-3A-A9IJ-01A	65 years, male, white, stage:ib, alive, 1854 days	4674.9
TCGA-HV-A5A3-01A	50 years, male, asian, stage:iia, dead, 128 days	4644.7
TCGA-2J-AABU-01A	56 years, male, white, stage:iib, dead, 277 days	4598.2
TCGA-IB-AAUM-01A	76 years, male, white, stage:iib, alive, 8 days	4594.5
TCGA-3A-A9I7-01A	45 years, male, black or african american, stage:iib, alive, 1323 days	4589.0
TCGA-S4-A8RO-01A	75 years, female, white, stage:iib, alive, 525 days	4532.6
TCGA-FB-A4P5-01A	69 years, female, white, stage:iib, dead, 179 days	4523.5
TCGA-2J-AAB8-01A	71 years, male, white, stage:iib, alive, 80 days	4474.0
TCGA-3A-A9I5-01A	58 years, male, white, alive, 1794 days	4460.5
TCGA-XD-AAUI-01A	50 years, female, white, stage:iib, dead, 366 days	4425.3
TCGA-HV-AA8X-01A	75 years, female, asian, stage:iib, dead, 532 days	4404.6
TCGA-3A-A9IR-01A	64 years, female, white, stage:ib, alive, 1542 days	4399.7
TCGA-HZ-A4BK-01A	72 years, male, white, stage:iib, alive, 657 days	4398.0
TCGA-HZ-8001-01A	69 years, male, white, stage:iii, alive, 706 days	4398.0
TCGA-FB-AAQ0-01A	68 years, male, white, stage:iia, dead, 473 days	4365.6
TCGA-FB-AAQ6-01A	85 years, male, white, stage:ia, dead, 244 days	4286.4
TCGA-IB-AAUO-01A	64 years, female, white, stage:iib, dead, 239 days	4277.7
TCGA-IB-AAUQ-01A	50 years, male, white, stage:iib, dead, 183 days	4256.6
TCGA-US-A77J-01A	81 years, female, white, stage:iib, dead, 568 days	4253.6
TCGA-S4-A8RM-01A	67 years, male, white, stage:iib, alive, 737 days	4242.9
TCGA-OE-A75W-01A	75 years, male, white, stage:iia, dead, 267 days	4205.8
TCGA-IB-A6UG-01A	65 years, male, white, stage:iib, dead, 41 days	4170.6
TCGA-US-A776-01A	61 years, male, white, stage:iia, alive, 1216 days	4120.6
TCGA-US-A77G-01A	64 years, male, white, stage:iib, dead, 12 days	4118.1
TCGA-FB-A5VM-01A	74 years, male, white, stage:ib, dead, 498 days	4101.8
TCGA-XN-A8T3-01A	67 years, male, white, stage:ib, alive, 951 days	4084.9
TCGA-IB-A5SO-01A	71 years, male, white, stage:iib, dead, 365 days	4015.2
TCGA-IB-A7M4-01A	81 years, male, white, stage:iib, alive, 483 days	3996.0
TCGA-YB-A89D-01A	59 years, male, white, stage:iib, alive, 350 days	3988.1
TCGA-HZ-8638-01A	84 years, female, white, stage:ia, dead, 151 days	3982.3
TCGA-HZ-A77Q-01A	55 years, female, white, stage:iib, alive, 33 days	3925.9
TCGA-Z5-AAPL-01A	74 years, female, white, stage:iia, alive, 467 days	3898.9
TCGA-3A-A9IX-01A	40 years, male, white, stage:ia, alive, 1037 days	3890.4
TCGA-HZ-A9TJ-01A	70 years, male, white, stage:iv, alive, 603 days	3887.1
TCGA-S4-A8RP-01A	77 years, female, white, stage:iib, dead, 702 days	3867.2
TCGA-2J-AABV-01A	74 years, male, white, stage:iib, dead, 652 days	3824.3
TCGA-H6-A45N-01A	88 years, female, white, stage:iib, dead, 421 days	3793.0
TCGA-IB-AAUW-01A	63 years, female, white, stage:iib, dead, 230 days	3789.8
TCGA-HZ-A77O-01A	77 years, female, white, stage:iib, dead, 160 days	3729.8
TCGA-2J-AAB9-01A	71 years, female, white, stage:iib, dead, 627 days	3725.7
TCGA-2J-AABI-01A	55 years, female, white, stage:iia, alive, 969 days	3721.8
TCGA-3A-A9IB-01A	69 years, female, white, stage:iib, dead, 224 days	3710.2
TCGA-IB-A6UF-01A	63 years, male, white, stage:iib, alive, 666 days	3693.1
TCGA-IB-8126-01A	80 years, female, white, stage:iii, alive, 462 days	3689.3
TCGA-2L-AAQI-01A	66 years, male, white, stage:iib, dead, 103 days	3672.3
TCGA-IB-AAUV-01A	49 years, male, white, stage:iib, alive, 404 days	3642.2
TCGA-3A-A9IO-01A	56 years, male, white, alive, 1942 days	3619.9
TCGA-FB-A545-01A	72 years, female, white, stage:iib, dead, 732 days	3549.7
TCGA-3A-A9IH-01A	66 years, female, white, stage:ia, alive, 1021 days	3454.9
TCGA-RB-AA9M-01A	43 years, male, white, stage:iib, alive, 286 days	3453.0
TCGA-FB-A78T-01A	71 years, female, white, stage:iib, dead, 375 days	3438.7
TCGA-2J-AAB4-01A	48 years, male, white, stage:iib, alive, 729 days	3416.8
TCGA-3E-AAAZ-01A	71 years, male, white, stage:iia, dead, 2182 days	3415.4
TCGA-2J-AABR-01A	60 years, female, white, stage:iia, alive, 438 days	3375.0
TCGA-IB-A7LX-01A	57 years, male, white, stage:iib, dead, 250 days	3365.6
TCGA-HV-A5A4-01A	72 years, female, asian, stage:iia, alive, 232 days	3356.2
TCGA-IB-A5ST-01A	64 years, female, white, stage:iib, alive, 635 days	3306.0
TCGA-IB-7645-01A	44 years, female, stage:iib, dead, 1502 days	3304.2
TCGA-IB-AAUS-01A	84 years, female, white, stage:iib, alive, 225 days	3258.0
TCGA-2J-AABF-01A	73 years, male, white, stage:iib, dead, 691 days	3228.6
TCGA-IB-AAUU-01A	35 years, male, white, stage:iib, alive, 245 days	3223.9
TCGA-HZ-A49G-01A	58 years, female, white, stage:iib, alive, 660 days	3195.6
TCGA-YH-A8SY-01A	73 years, female, white, alive, 388 days	3184.5
TCGA-US-A774-01A	76 years, female, white, stage:iib, dead, 695 days	3069.1
TCGA-IB-7644-01A	65 years, female, white, stage:iv, dead, 394 days	2948.2
TCGA-L1-A7W4-01A	48 years, female, white, stage:iib, dead, 278 days	2933.2
TCGA-IB-7897-01A	54 years, female, white, stage:iib, dead, 486 days	2887.9
TCGA-3A-A9J0-01A	75 years, male, white, stage:iib, alive, 743 days	2859.3
TCGA-LB-A8F3-01A	64 years, female, black or african american, stage:iia, alive, 379 days	2785.4
TCGA-IB-AAUP-01A	68 years, male, white, stage:iib, alive, 431 days	2772.4
TCGA-IB-AAUN-01A	74 years, female, white, stage:ib, dead, 144 days	2759.3
TCGA-IB-AAUT-01A	65 years, male, white, stage:iib, alive, 287 days	2740.4
TCGA-YY-A8LH-01A	61 years, female, white, stage:iib, alive, 2016 days	2733.4
TCGA-FB-AAPQ-01A	65 years, male, white, stage:iib, dead, 1130 days	2724.3
TCGA-XD-AAUL-01A	56 years, male, white, stage:iia, alive, 498 days	2710.6
TCGA-IB-A5SQ-01A	56 years, female, white, stage:ib, dead, 219 days	2707.9
TCGA-FB-A4P6-01A	54 years, male, white, stage:iib, alive, 767 days	2698.8
TCGA-HZ-7923-01A	65 years, male, white, stage:iia, alive, 314 days	2676.5
TCGA-HZ-8002-01A	61 years, male, white, stage:iib, dead, 366 days	2646.3
TCGA-F2-A7TX-01A	77 years, male, white, stage:iib, dead, 95 days	2613.3
TCGA-F2-7276-01A	64 years, male, white, stage:iib, dead, 216 days	2539.7
TCGA-IB-7646-01A	60 years, male, white, stage:iib, dead, 145 days	2524.9
TCGA-LB-A9Q5-01A	63 years, female, white, stage:iib, dead, 313 days	2517.4
TCGA-IB-7885-01A	78 years, female, white, stage:iib, alive, 1257 days	2488.5
TCGA-HZ-A4BH-01A	75 years, male, white, stage:iib, alive, 194 days	2425.9
TCGA-HZ-7925-01A	66 years, male, white, stage:iib, dead, 614 days	2398.1
TCGA-IB-7654-01A	80 years, male, white, stage:iib, dead, 476 days	2362.1
TCGA-HZ-7924-01A	60 years, female, white, stage:iia, alive, 840 days	2361.4
TCGA-3A-A9IU-01A	65 years, male, white, stage:iib, dead, 458 days	2305.0
TCGA-3A-A9IC-01A	61 years, female, white, stage:iib, dead, 738 days	2267.1
TCGA-IB-7651-01A	64 years, female, white, stage:iib, dead, 603 days	2243.3
TCGA-H6-8124-01A	56 years, female, white, stage:iib, alive, 392 days	2188.7
TCGA-HZ-8636-01A	58 years, female, white, stage:iv, dead, 545 days	2184.3
TCGA-F2-6879-01A	57 years, male, white, stage:iib, dead, 334 days	2156.1
TCGA-HZ-7926-01A	57 years, male, black or african american, stage:iib, dead, 518 days	2145.2
TCGA-HZ-8003-01A	65 years, female, white, stage:iib, dead, 596 days	2138.9
TCGA-IB-7891-01A	49 years, female, white, stage:iib, dead, 913 days	2097.7
TCGA-IB-7887-01A	62 years, female, white, stage:iib, dead, 110 days	2094.1
TCGA-HZ-A49I-01A	77 years, male, white, stage:iib, dead, 308 days	2073.9
TCGA-2L-AAQA-01A	76 years, male, white, stage:iib, dead, 143 days	2026.8
TCGA-IB-7888-01A	66 years, female, black or african american, stage:iia, dead, 1332 days	1989.7
TCGA-IB-7652-01A	49 years, female, asian, stage:iib, alive, 1116 days	1937.0
TCGA-IB-8127-01A	59 years, male, white, stage:iib, alive, 522 days	1908.8
TCGA-HZ-7919-01A	52 years, female, white, stage:iib, dead, 593 days	1813.2
TCGA-2J-AAB6-01A	75 years, male, white, stage:iia, dead, 293 days	1753.4
TCGA-HV-A7OL-01A	70 years, male, asian, stage:iia, alive, 252 days	1746.8
TCGA-HZ-7918-01A	72 years, male, white, stage:iib, alive, 969 days	1638.8
TCGA-2J-AABP-01A	58 years, female, white, stage:iib, alive, 463 days	1627.6
TCGA-IB-7893-01A	64 years, male, white, stage:iia, dead, 117 days	1606.0
TCGA-HZ-7920-01A	71 years, male, white, stage:ib, dead, 236 days	1523.0
TCGA-IB-7890-01A	73 years, male, stage:ib, dead, 598 days	1517.6
TCGA-IB-A5SS-01A	64 years, female, white, stage:iib, dead, 460 days	1430.5
TCGA-F2-7273-01A	54 years, male, black or african american, stage:iib, dead, 592 days	1428.3
TCGA-3A-A9IZ-01A	47 years, male, white, stage:iib, dead, 308 days	1337.9
TCGA-HZ-7922-01A	61 years, female, white, stage:iib, alive, 4 days	1310.7
TCGA-HZ-8005-01A	81 years, male, white, stage:iib, dead, 120 days	976.9
TCGA-IB-7886-01A	80 years, male, white, stage:iib, dead, 123 days	907.7
Show allShow less

PANCREATIC CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells. Read more	Antibody HPA063296
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Click images for details