Expression of TMSB4X in pancreatic cancer

PANCREATIC CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

TMSB4X is not prognostic in pancreatic cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 754.75
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

1014.9

Number of samples

176

Samples

Sample	Description	FPKM
TCGA-FB-AAQ3-01A	65 years, female, white, stage:iib, dead, 31 days	3228.2
TCGA-Z5-AAPL-01A	74 years, female, white, stage:iia, alive, 467 days	1993.0
TCGA-Q3-A5QY-01A	58 years, male, white, stage:iib, alive, 416 days	1953.0
TCGA-IB-AAUQ-01A	50 years, male, white, stage:iib, dead, 183 days	1876.0
TCGA-US-A77J-01A	81 years, female, white, stage:iib, dead, 568 days	1797.8
TCGA-IB-7889-01A	86 years, female, white, stage:iib, dead, 481 days	1757.8
TCGA-RB-AA9M-01A	43 years, male, white, stage:iib, alive, 286 days	1725.9
TCGA-XD-AAUL-01A	56 years, male, white, stage:iia, alive, 498 days	1714.6
TCGA-3A-A9IB-01A	69 years, female, white, stage:iib, dead, 224 days	1713.3
TCGA-US-A779-01A	54 years, female, white, stage:iib, dead, 511 days	1653.0
TCGA-OE-A75W-01A	75 years, male, white, stage:iia, dead, 267 days	1644.6
TCGA-2J-AAB6-01A	75 years, male, white, stage:iia, dead, 293 days	1629.5
TCGA-3A-A9IC-01A	61 years, female, white, stage:iib, dead, 738 days	1605.1
TCGA-HV-AA8X-01A	75 years, female, asian, stage:iib, dead, 532 days	1594.3
TCGA-FB-AAPY-01A	71 years, male, white, stage:iib, dead, 1059 days	1579.7
TCGA-FB-A5VM-01A	74 years, male, white, stage:ib, dead, 498 days	1574.5
TCGA-RL-AAAS-01A	60 years, female, white, stage:ib, alive, 9 days	1564.3
TCGA-HV-A7OL-01A	70 years, male, asian, stage:iia, alive, 252 days	1522.8
TCGA-2J-AABO-01A	43 years, male, white, stage:iib, alive, 440 days	1510.9
TCGA-3A-A9IH-01A	66 years, female, white, stage:ia, alive, 1021 days	1479.8
TCGA-2L-AAQL-01A	82 years, male, white, stage:iib, dead, 292 days	1463.4
TCGA-FB-AAPZ-01A	54 years, male, white, stage:iib, alive, 716 days	1435.9
TCGA-2L-AAQJ-01A	49 years, female, white, stage:iii, dead, 394 days	1431.9
TCGA-IB-AAUR-01A	67 years, male, white, stage:iib, alive, 338 days	1424.3
TCGA-2J-AABP-01A	58 years, female, white, stage:iib, alive, 463 days	1411.6
TCGA-IB-8127-01A	59 years, male, white, stage:iib, alive, 522 days	1382.7
TCGA-2L-AAQE-01A	56 years, male, white, stage:iib, dead, 684 days	1370.3
TCGA-IB-AAUP-01A	68 years, male, white, stage:iib, alive, 431 days	1365.0
TCGA-XN-A8T5-01A	53 years, female, white, stage:ib, alive, 720 days	1362.5
TCGA-PZ-A5RE-01A	44 years, female, white, stage:iib, dead, 470 days	1339.0
TCGA-XD-AAUI-01A	50 years, female, white, stage:iib, dead, 366 days	1330.1
TCGA-2J-AABU-01A	56 years, male, white, stage:iib, dead, 277 days	1328.5
TCGA-FB-AAPS-01A	62 years, female, white, stage:iib, alive, 228 days	1327.2
TCGA-2J-AABH-01A	61 years, male, white, stage:iia, alive, 1287 days	1307.6
TCGA-YH-A8SY-01A	73 years, female, white, alive, 388 days	1277.8
TCGA-IB-A6UF-01A	63 years, male, white, stage:iib, alive, 666 days	1277.2
TCGA-3A-A9I9-01A	67 years, male, white, stage:iia, dead, 634 days	1275.4
TCGA-IB-AAUS-01A	84 years, female, white, stage:iib, alive, 225 days	1269.3
TCGA-IB-7649-01A	73 years, female, stage:iib, dead, 467 days	1267.4
TCGA-IB-7646-01A	60 years, male, white, stage:iib, dead, 145 days	1254.9
TCGA-LB-A8F3-01A	64 years, female, black or african american, stage:iia, alive, 379 days	1238.0
TCGA-F2-A7TX-01A	77 years, male, white, stage:iib, dead, 95 days	1237.9
TCGA-HZ-8001-01A	69 years, male, white, stage:iii, alive, 706 days	1220.8
TCGA-2J-AAB8-01A	71 years, male, white, stage:iib, alive, 80 days	1213.0
TCGA-HZ-8636-01A	58 years, female, white, stage:iv, dead, 545 days	1201.9
TCGA-2L-AAQI-01A	66 years, male, white, stage:iib, dead, 103 days	1197.9
TCGA-HZ-8315-01A	54 years, female, white, stage:iia, dead, 299 days	1195.4
TCGA-IB-A5ST-01A	64 years, female, white, stage:iib, alive, 635 days	1193.8
TCGA-2J-AAB4-01A	48 years, male, white, stage:iib, alive, 729 days	1193.7
TCGA-3E-AAAY-01A	67 years, male, white, stage:iib, alive, 2285 days	1178.2
TCGA-F2-A8YN-01A	76 years, male, white, stage:iia, alive, 517 days	1176.3
TCGA-2J-AABR-01A	60 years, female, white, stage:iia, alive, 438 days	1174.4
TCGA-HZ-7925-01A	66 years, male, white, stage:iib, dead, 614 days	1171.5
TCGA-IB-A5SO-01A	71 years, male, white, stage:iib, dead, 365 days	1168.6
TCGA-FB-AAQ2-01A	81 years, female, white, stage:iib, dead, 153 days	1167.3
TCGA-IB-AAUN-01A	74 years, female, white, stage:ib, dead, 144 days	1165.5
TCGA-LB-A7SX-01A	74 years, female, black or african american, stage:iib, dead, 393 days	1163.9
TCGA-3A-A9I5-01A	58 years, male, white, alive, 1794 days	1151.9
TCGA-2J-AABF-01A	73 years, male, white, stage:iib, dead, 691 days	1151.0
TCGA-IB-A5SS-01A	64 years, female, white, stage:iib, dead, 460 days	1140.7
TCGA-IB-7887-01A	62 years, female, white, stage:iib, dead, 110 days	1134.2
TCGA-XN-A8T3-01A	67 years, male, white, stage:ib, alive, 951 days	1133.3
TCGA-3A-A9IU-01A	65 years, male, white, stage:iib, dead, 458 days	1115.0
TCGA-YB-A89D-01A	59 years, male, white, stage:iib, alive, 350 days	1113.3
TCGA-US-A776-01A	61 years, male, white, stage:iia, alive, 1216 days	1097.6
TCGA-HZ-A77Q-01A	55 years, female, white, stage:iib, alive, 33 days	1093.9
TCGA-IB-AAUU-01A	35 years, male, white, stage:iib, alive, 245 days	1087.6
TCGA-H6-8124-01A	56 years, female, white, stage:iib, alive, 392 days	1079.3
TCGA-S4-A8RP-01A	77 years, female, white, stage:iib, dead, 702 days	1075.1
TCGA-IB-AAUV-01A	49 years, male, white, stage:iib, alive, 404 days	1068.6
TCGA-HZ-A77O-01A	77 years, female, white, stage:iib, dead, 160 days	1066.4
TCGA-IB-AAUW-01A	63 years, female, white, stage:iib, dead, 230 days	1058.7
TCGA-IB-A7M4-01A	81 years, male, white, stage:iib, alive, 483 days	1054.4
TCGA-3A-A9IX-01A	40 years, male, white, stage:ia, alive, 1037 days	1047.3
TCGA-2J-AAB9-01A	71 years, female, white, stage:iib, dead, 627 days	1033.3
TCGA-FB-AAPU-01A	41 years, female, asian, stage:iia, dead, 381 days	1032.4
TCGA-IB-AAUT-01A	65 years, male, white, stage:iib, alive, 287 days	1026.9
TCGA-HZ-8637-01A	76 years, female, white, stage:iib, dead, 517 days	1020.5
TCGA-FB-A4P5-01A	69 years, female, white, stage:iib, dead, 179 days	1014.1
TCGA-IB-7885-01A	78 years, female, white, stage:iib, alive, 1257 days	1009.3
TCGA-L1-A7W4-01A	48 years, female, white, stage:iib, dead, 278 days	1008.4
TCGA-FB-A7DR-01A	48 years, male, asian, stage:iia, dead, 353 days	1006.3
TCGA-FB-AAQ1-01A	49 years, male, white, stage:iib, dead, 123 days	1002.0
TCGA-2L-AAQA-01A	76 years, male, white, stage:iib, dead, 143 days	999.3
TCGA-HZ-7919-01A	52 years, female, white, stage:iib, dead, 593 days	998.7
TCGA-HZ-A49I-01A	77 years, male, white, stage:iib, dead, 308 days	994.1
TCGA-HZ-A4BH-01A	75 years, male, white, stage:iib, alive, 194 days	991.0
TCGA-IB-A5SQ-01A	56 years, female, white, stage:ib, dead, 219 days	988.6
TCGA-HV-A5A6-01A	65 years, female, asian, stage:iib, dead, 2036 days	981.6
TCGA-H8-A6C1-01A	53 years, male, white, stage:iia, alive, 671 days	981.1
TCGA-RB-A7B8-01A	81 years, female, white, stage:iib, dead, 466 days	980.0
TCGA-Q3-AA2A-01A	64 years, female, white, stage:ib, alive, 95 days	977.1
TCGA-HV-AA8V-01A	50 years, male, asian, stage:iib, alive, 920 days	976.1
TCGA-US-A774-01A	76 years, female, white, stage:iib, dead, 695 days	972.3
TCGA-3A-A9I7-01A	45 years, male, black or african american, stage:iib, alive, 1323 days	971.1
TCGA-H6-A45N-01A	88 years, female, white, stage:iib, dead, 421 days	970.2
TCGA-2J-AABE-01A	73 years, male, white, stage:iia, alive, 676 days	969.6
TCGA-YY-A8LH-01A	61 years, female, white, stage:iib, alive, 2016 days	940.8
TCGA-S4-A8RO-01A	75 years, female, white, stage:iib, alive, 525 days	940.2
TCGA-IB-7652-01A	49 years, female, asian, stage:iib, alive, 1116 days	933.0
TCGA-HZ-7922-01A	61 years, female, white, stage:iib, alive, 4 days	931.3
TCGA-HZ-A49H-01A	68 years, female, white, stage:iib, alive, 491 days	926.0
TCGA-2J-AABK-01A	71 years, male, white, stage:iib, alive, 484 days	924.7
TCGA-FB-A78T-01A	71 years, female, white, stage:iib, dead, 375 days	924.3
TCGA-IB-7644-01A	65 years, female, white, stage:iv, dead, 394 days	920.1
TCGA-2J-AAB1-01A	65 years, male, white, stage:iib, dead, 66 days	913.0
TCGA-3A-A9IZ-01A	47 years, male, white, stage:iib, dead, 308 days	912.6
TCGA-IB-7888-01A	66 years, female, black or african american, stage:iia, dead, 1332 days	911.1
TCGA-XD-AAUH-01A	57 years, female, white, stage:iib, alive, 395 days	907.8
TCGA-HZ-8002-01A	61 years, male, white, stage:iib, dead, 366 days	907.0
TCGA-IB-7645-01A	44 years, female, stage:iib, dead, 1502 days	905.4
TCGA-FB-AAQ0-01A	68 years, male, white, stage:iia, dead, 473 days	898.2
TCGA-IB-7890-01A	73 years, male, stage:ib, dead, 598 days	895.2
TCGA-IB-7886-01A	80 years, male, white, stage:iib, dead, 123 days	894.9
TCGA-IB-A7LX-01A	57 years, male, white, stage:iib, dead, 250 days	881.2
TCGA-HZ-A4BK-01A	72 years, male, white, stage:iib, alive, 657 days	878.7
TCGA-HZ-7918-01A	72 years, male, white, stage:iib, alive, 969 days	869.9
TCGA-IB-7891-01A	49 years, female, white, stage:iib, dead, 913 days	866.0
TCGA-2J-AABA-01A	55 years, male, white, stage:iib, dead, 607 days	861.7
TCGA-HZ-7920-01A	71 years, male, white, stage:ib, dead, 236 days	848.4
TCGA-HZ-A8P1-01A	81 years, male, white, stage:ib, alive, 7 days	847.5
TCGA-M8-A5N4-01A	48 years, female, stage:iia, alive, 584 days	843.2
TCGA-HZ-7923-01A	65 years, male, white, stage:iia, alive, 314 days	835.1
TCGA-F2-7276-01A	64 years, male, white, stage:iib, dead, 216 days	832.7
TCGA-IB-A5SP-01A	77 years, male, white, stage:iia, alive, 482 days	827.7
TCGA-2J-AABI-01A	55 years, female, white, stage:iia, alive, 969 days	816.9
TCGA-F2-6879-01A	57 years, male, white, stage:iib, dead, 334 days	816.2
TCGA-F2-A44G-01A	79 years, female, white, stage:iib, dead, 233 days	812.6
TCGA-US-A77E-01A	73 years, male, white, stage:iib, dead, 430 days	800.5
TCGA-HV-A5A3-01A	50 years, male, asian, stage:iia, dead, 128 days	800.2
TCGA-IB-7897-01A	54 years, female, white, stage:iib, dead, 486 days	791.6
TCGA-IB-7654-01A	80 years, male, white, stage:iib, dead, 476 days	788.3
TCGA-HZ-7926-01A	57 years, male, black or african american, stage:iib, dead, 518 days	773.5
TCGA-HV-A5A5-01A	61 years, female, asian, stage:iib, alive, 289 days	766.7
TCGA-F2-7273-01A	54 years, male, black or african american, stage:iib, dead, 592 days	755.0
TCGA-3A-A9J0-01A	75 years, male, white, stage:iib, alive, 743 days	754.5
TCGA-XD-AAUG-01A	66 years, female, white, stage:iv, alive, 420 days	748.7
TCGA-HZ-A49G-01A	58 years, female, white, stage:iib, alive, 660 days	746.5
TCGA-HZ-A77P-01A	77 years, male, white, stage:iib, alive, 330 days	738.1
TCGA-S4-A8RM-01A	67 years, male, white, stage:iib, alive, 737 days	730.7
TCGA-HV-A5A4-01A	72 years, female, asian, stage:iia, alive, 232 days	729.7
TCGA-IB-7893-01A	64 years, male, white, stage:iia, dead, 117 days	724.7
TCGA-FB-A4P6-01A	54 years, male, white, stage:iib, alive, 767 days	717.0
TCGA-FB-A545-01A	72 years, female, white, stage:iib, dead, 732 days	671.6
TCGA-US-A77G-01A	64 years, male, white, stage:iib, dead, 12 days	666.7
TCGA-HZ-7289-01A	77 years, male, white, stage:iib, dead, 661 days	665.4
TCGA-IB-7651-01A	64 years, female, white, stage:iib, dead, 603 days	654.7
TCGA-3E-AAAZ-01A	71 years, male, white, stage:iia, dead, 2182 days	651.0
TCGA-HZ-8317-01A	69 years, female, white, stage:iib, dead, 378 days	642.0
TCGA-HZ-8638-01A	84 years, female, white, stage:ia, dead, 151 days	625.8
TCGA-FB-AAPP-01A	71 years, male, white, stage:iib, dead, 485 days	619.6
TCGA-F2-A44H-01A	65 years, male, white, stage:iia, alive, 586 days	615.3
TCGA-LB-A9Q5-01A	63 years, female, white, stage:iib, dead, 313 days	606.3
TCGA-HZ-8519-01A	73 years, male, white, stage:ia, alive, 454 days	605.9
TCGA-FB-AAQ6-01A	85 years, male, white, stage:ia, dead, 244 days	600.7
TCGA-IB-AAUO-01A	64 years, female, white, stage:iib, dead, 239 days	593.1
TCGA-FB-AAPQ-01A	65 years, male, white, stage:iib, dead, 1130 days	591.5
TCGA-2J-AABT-01A	72 years, female, white, stage:iib, alive, 319 days	564.0
TCGA-HZ-A9TJ-01A	70 years, male, white, stage:iv, alive, 603 days	531.4
TCGA-HZ-8005-01A	81 years, male, white, stage:iib, dead, 120 days	529.3
TCGA-HZ-7924-01A	60 years, female, white, stage:iia, alive, 840 days	516.0
TCGA-IB-A6UG-01A	65 years, male, white, stage:iib, dead, 41 days	511.3
TCGA-IB-8126-01A	80 years, female, white, stage:iii, alive, 462 days	489.2
TCGA-3A-A9IL-01A	39 years, female, white, stage:i, alive, 2741 days	477.7
TCGA-IB-AAUM-01A	76 years, male, white, stage:iib, alive, 8 days	442.9
TCGA-3A-A9IJ-01A	65 years, male, white, stage:ib, alive, 1854 days	436.7
TCGA-HZ-8003-01A	65 years, female, white, stage:iib, dead, 596 days	423.2
TCGA-2L-AAQM-01A	52 years, male, white, stage:iib, alive, 1383 days	403.8
TCGA-2J-AABV-01A	74 years, male, white, stage:iib, dead, 652 days	397.9
TCGA-3A-A9IN-01A	62 years, female, white, stage:ib, alive, 2084 days	381.1
TCGA-HV-A7OP-01A	72 years, male, asian, stage:iib, alive, 978 days	374.2
TCGA-F2-6880-01A	70 years, male, white, stage:iib, alive, 289 days	189.6
TCGA-3A-A9IV-01A	59 years, female, white, stage:ib, alive, 1103 days	187.4
TCGA-3A-A9IO-01A	56 years, male, white, alive, 1942 days	139.6
TCGA-3A-A9IR-01A	64 years, female, white, stage:ib, alive, 1542 days	131.6
TCGA-3A-A9IS-01A	67 years, male, white, stage:ib, alive, 998 days	64.0
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PANCREATIC CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells. Read more	Antibody CAB033806
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Click images for details