Expression of RPS18 in pancreatic cancer

PANCREATIC CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

RPS18 is not prognostic in pancreatic cancer

Stage:

Survival analysis

Current cut offⁱ:
Best expression cut offⁱ: 491.03
Median expressionⁱ: N/A
Median follow up timeⁱ: N/A
P scoreⁱ N/A
5-year survival highⁱ N/A
5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

600.1

Number of samples

176

Samples

Sample	Description	FPKM
TCGA-HV-A7OP-01A	72 years, male, asian, stage:iib, alive, 978 days	3505.6
TCGA-FB-AAQ3-01A	65 years, female, white, stage:iib, dead, 31 days	1632.3
TCGA-FB-AAQ6-01A	85 years, male, white, stage:ia, dead, 244 days	1304.6
TCGA-IB-A7M4-01A	81 years, male, white, stage:iib, alive, 483 days	1254.1
TCGA-Q3-A5QY-01A	58 years, male, white, stage:iib, alive, 416 days	1237.8
TCGA-IB-7889-01A	86 years, female, white, stage:iib, dead, 481 days	1184.4
TCGA-HZ-A9TJ-01A	70 years, male, white, stage:iv, alive, 603 days	1161.8
TCGA-3A-A9I5-01A	58 years, male, white, alive, 1794 days	1104.9
TCGA-2J-AABV-01A	74 years, male, white, stage:iib, dead, 652 days	1103.9
TCGA-Q3-AA2A-01A	64 years, female, white, stage:ib, alive, 95 days	1026.5
TCGA-FB-A5VM-01A	74 years, male, white, stage:ib, dead, 498 days	1011.6
TCGA-FB-AAQ2-01A	81 years, female, white, stage:iib, dead, 153 days	997.5
TCGA-IB-7886-01A	80 years, male, white, stage:iib, dead, 123 days	996.4
TCGA-OE-A75W-01A	75 years, male, white, stage:iia, dead, 267 days	966.2
TCGA-IB-7644-01A	65 years, female, white, stage:iv, dead, 394 days	948.0
TCGA-Z5-AAPL-01A	74 years, female, white, stage:iia, alive, 467 days	943.7
TCGA-RL-AAAS-01A	60 years, female, white, stage:ib, alive, 9 days	937.1
TCGA-IB-7887-01A	62 years, female, white, stage:iib, dead, 110 days	933.7
TCGA-FB-AAQ0-01A	68 years, male, white, stage:iia, dead, 473 days	930.8
TCGA-2J-AABK-01A	71 years, male, white, stage:iib, alive, 484 days	890.1
TCGA-HZ-A8P1-01A	81 years, male, white, stage:ib, alive, 7 days	877.7
TCGA-LB-A8F3-01A	64 years, female, black or african american, stage:iia, alive, 379 days	873.8
TCGA-S4-A8RO-01A	75 years, female, white, stage:iib, alive, 525 days	860.3
TCGA-3E-AAAZ-01A	71 years, male, white, stage:iia, dead, 2182 days	859.6
TCGA-HZ-8001-01A	69 years, male, white, stage:iii, alive, 706 days	849.2
TCGA-FB-AAPZ-01A	54 years, male, white, stage:iib, alive, 716 days	829.7
TCGA-IB-AAUR-01A	67 years, male, white, stage:iib, alive, 338 days	828.8
TCGA-US-A77J-01A	81 years, female, white, stage:iib, dead, 568 days	823.4
TCGA-FB-A78T-01A	71 years, female, white, stage:iib, dead, 375 days	806.9
TCGA-IB-A7LX-01A	57 years, male, white, stage:iib, dead, 250 days	804.3
TCGA-2L-AAQA-01A	76 years, male, white, stage:iib, dead, 143 days	802.2
TCGA-FB-AAPU-01A	41 years, female, asian, stage:iia, dead, 381 days	796.7
TCGA-XN-A8T5-01A	53 years, female, white, stage:ib, alive, 720 days	780.8
TCGA-2J-AAB8-01A	71 years, male, white, stage:iib, alive, 80 days	743.1
TCGA-HZ-A49H-01A	68 years, female, white, stage:iib, alive, 491 days	733.4
TCGA-2L-AAQL-01A	82 years, male, white, stage:iib, dead, 292 days	732.9
TCGA-2J-AABI-01A	55 years, female, white, stage:iia, alive, 969 days	729.7
TCGA-IB-AAUP-01A	68 years, male, white, stage:iib, alive, 431 days	724.7
TCGA-IB-A5ST-01A	64 years, female, white, stage:iib, alive, 635 days	712.3
TCGA-XD-AAUH-01A	57 years, female, white, stage:iib, alive, 395 days	709.5
TCGA-S4-A8RM-01A	67 years, male, white, stage:iib, alive, 737 days	700.5
TCGA-IB-A6UG-01A	65 years, male, white, stage:iib, dead, 41 days	683.6
TCGA-HZ-8637-01A	76 years, female, white, stage:iib, dead, 517 days	683.0
TCGA-US-A776-01A	61 years, male, white, stage:iia, alive, 1216 days	682.1
TCGA-H8-A6C1-01A	53 years, male, white, stage:iia, alive, 671 days	676.6
TCGA-FB-AAPY-01A	71 years, male, white, stage:iib, dead, 1059 days	674.7
TCGA-HZ-A77O-01A	77 years, female, white, stage:iib, dead, 160 days	665.0
TCGA-IB-7888-01A	66 years, female, black or african american, stage:iia, dead, 1332 days	663.2
TCGA-YY-A8LH-01A	61 years, female, white, stage:iib, alive, 2016 days	662.7
TCGA-3A-A9J0-01A	75 years, male, white, stage:iib, alive, 743 days	654.1
TCGA-IB-AAUV-01A	49 years, male, white, stage:iib, alive, 404 days	642.6
TCGA-FB-AAPQ-01A	65 years, male, white, stage:iib, dead, 1130 days	642.3
TCGA-2J-AABA-01A	55 years, male, white, stage:iib, dead, 607 days	630.4
TCGA-HZ-7920-01A	71 years, male, white, stage:ib, dead, 236 days	629.9
TCGA-F2-A44G-01A	79 years, female, white, stage:iib, dead, 233 days	623.5
TCGA-XD-AAUG-01A	66 years, female, white, stage:iv, alive, 420 days	619.6
TCGA-3A-A9IU-01A	65 years, male, white, stage:iib, dead, 458 days	618.4
TCGA-IB-AAUM-01A	76 years, male, white, stage:iib, alive, 8 days	614.5
TCGA-XD-AAUI-01A	50 years, female, white, stage:iib, dead, 366 days	612.7
TCGA-L1-A7W4-01A	48 years, female, white, stage:iib, dead, 278 days	608.0
TCGA-HZ-8002-01A	61 years, male, white, stage:iib, dead, 366 days	607.4
TCGA-2J-AABH-01A	61 years, male, white, stage:iia, alive, 1287 days	603.6
TCGA-3A-A9IX-01A	40 years, male, white, stage:ia, alive, 1037 days	602.7
TCGA-3A-A9IZ-01A	47 years, male, white, stage:iib, dead, 308 days	598.2
TCGA-3A-A9IB-01A	69 years, female, white, stage:iib, dead, 224 days	595.1
TCGA-IB-AAUQ-01A	50 years, male, white, stage:iib, dead, 183 days	594.3
TCGA-FB-AAQ1-01A	49 years, male, white, stage:iib, dead, 123 days	591.5
TCGA-2J-AABP-01A	58 years, female, white, stage:iib, alive, 463 days	588.0
TCGA-2J-AAB9-01A	71 years, female, white, stage:iib, dead, 627 days	584.7
TCGA-IB-7649-01A	73 years, female, stage:iib, dead, 467 days	566.8
TCGA-HV-A7OL-01A	70 years, male, asian, stage:iia, alive, 252 days	562.1
TCGA-HZ-7925-01A	66 years, male, white, stage:iib, dead, 614 days	562.1
TCGA-IB-7891-01A	49 years, female, white, stage:iib, dead, 913 days	560.3
TCGA-3E-AAAY-01A	67 years, male, white, stage:iib, alive, 2285 days	553.4
TCGA-2J-AABE-01A	73 years, male, white, stage:iia, alive, 676 days	553.1
TCGA-US-A774-01A	76 years, female, white, stage:iib, dead, 695 days	551.5
TCGA-HZ-7289-01A	77 years, male, white, stage:iib, dead, 661 days	551.1
TCGA-HZ-8005-01A	81 years, male, white, stage:iib, dead, 120 days	546.5
TCGA-2J-AAB1-01A	65 years, male, white, stage:iib, dead, 66 days	546.0
TCGA-IB-7645-01A	44 years, female, stage:iib, dead, 1502 days	543.6
TCGA-2J-AAB6-01A	75 years, male, white, stage:iia, dead, 293 days	543.4
TCGA-HZ-8519-01A	73 years, male, white, stage:ia, alive, 454 days	543.3
TCGA-2L-AAQJ-01A	49 years, female, white, stage:iii, dead, 394 days	539.9
TCGA-FB-AAPS-01A	62 years, female, white, stage:iib, alive, 228 days	539.3
TCGA-3A-A9IC-01A	61 years, female, white, stage:iib, dead, 738 days	536.7
TCGA-IB-A5SQ-01A	56 years, female, white, stage:ib, dead, 219 days	533.5
TCGA-RB-A7B8-01A	81 years, female, white, stage:iib, dead, 466 days	527.5
TCGA-F2-A7TX-01A	77 years, male, white, stage:iib, dead, 95 days	525.5
TCGA-IB-8127-01A	59 years, male, white, stage:iib, alive, 522 days	517.5
TCGA-F2-6879-01A	57 years, male, white, stage:iib, dead, 334 days	513.3
TCGA-IB-7651-01A	64 years, female, white, stage:iib, dead, 603 days	511.2
TCGA-S4-A8RP-01A	77 years, female, white, stage:iib, dead, 702 days	510.8
TCGA-IB-AAUN-01A	74 years, female, white, stage:ib, dead, 144 days	509.9
TCGA-IB-7893-01A	64 years, male, white, stage:iia, dead, 117 days	508.5
TCGA-IB-AAUO-01A	64 years, female, white, stage:iib, dead, 239 days	505.3
TCGA-FB-A4P5-01A	69 years, female, white, stage:iib, dead, 179 days	505.0
TCGA-2J-AABO-01A	43 years, male, white, stage:iib, alive, 440 days	502.9
TCGA-F2-7276-01A	64 years, male, white, stage:iib, dead, 216 days	501.5
TCGA-IB-7654-01A	80 years, male, white, stage:iib, dead, 476 days	501.5
TCGA-IB-7897-01A	54 years, female, white, stage:iib, dead, 486 days	500.8
TCGA-YH-A8SY-01A	73 years, female, white, alive, 388 days	499.6
TCGA-2L-AAQI-01A	66 years, male, white, stage:iib, dead, 103 days	498.8
TCGA-HV-A5A3-01A	50 years, male, asian, stage:iia, dead, 128 days	494.4
TCGA-HZ-7923-01A	65 years, male, white, stage:iia, alive, 314 days	491.2
TCGA-IB-AAUW-01A	63 years, female, white, stage:iib, dead, 230 days	491.1
TCGA-IB-AAUT-01A	65 years, male, white, stage:iib, alive, 287 days	491.0
TCGA-HV-A5A4-01A	72 years, female, asian, stage:iia, alive, 232 days	484.8
TCGA-3A-A9I7-01A	45 years, male, black or african american, stage:iib, alive, 1323 days	482.7
TCGA-HZ-7926-01A	57 years, male, black or african american, stage:iib, dead, 518 days	482.7
TCGA-2J-AABR-01A	60 years, female, white, stage:iia, alive, 438 days	481.6
TCGA-IB-A5SO-01A	71 years, male, white, stage:iib, dead, 365 days	481.0
TCGA-F2-6880-01A	70 years, male, white, stage:iib, alive, 289 days	480.7
TCGA-F2-A44H-01A	65 years, male, white, stage:iia, alive, 586 days	477.8
TCGA-IB-7885-01A	78 years, female, white, stage:iib, alive, 1257 days	476.8
TCGA-HZ-A77Q-01A	55 years, female, white, stage:iib, alive, 33 days	475.4
TCGA-HZ-7924-01A	60 years, female, white, stage:iia, alive, 840 days	473.2
TCGA-LB-A9Q5-01A	63 years, female, white, stage:iib, dead, 313 days	472.3
TCGA-FB-A545-01A	72 years, female, white, stage:iib, dead, 732 days	470.1
TCGA-HZ-A77P-01A	77 years, male, white, stage:iib, alive, 330 days	469.0
TCGA-2L-AAQE-01A	56 years, male, white, stage:iib, dead, 684 days	468.9
TCGA-2J-AABT-01A	72 years, female, white, stage:iib, alive, 319 days	464.1
TCGA-HZ-A49G-01A	58 years, female, white, stage:iib, alive, 660 days	457.4
TCGA-3A-A9I9-01A	67 years, male, white, stage:iia, dead, 634 days	454.7
TCGA-3A-A9IJ-01A	65 years, male, white, stage:ib, alive, 1854 days	452.4
TCGA-FB-AAPP-01A	71 years, male, white, stage:iib, dead, 485 days	447.0
TCGA-3A-A9IO-01A	56 years, male, white, alive, 1942 days	446.9
TCGA-HZ-8636-01A	58 years, female, white, stage:iv, dead, 545 days	446.6
TCGA-H6-A45N-01A	88 years, female, white, stage:iib, dead, 421 days	446.3
TCGA-FB-A7DR-01A	48 years, male, asian, stage:iia, dead, 353 days	446.0
TCGA-F2-7273-01A	54 years, male, black or african american, stage:iib, dead, 592 days	444.4
TCGA-H6-8124-01A	56 years, female, white, stage:iib, alive, 392 days	440.8
TCGA-YB-A89D-01A	59 years, male, white, stage:iib, alive, 350 days	432.6
TCGA-2J-AABU-01A	56 years, male, white, stage:iib, dead, 277 days	432.1
TCGA-HV-AA8X-01A	75 years, female, asian, stage:iib, dead, 532 days	424.9
TCGA-IB-8126-01A	80 years, female, white, stage:iii, alive, 462 days	424.1
TCGA-IB-A5SP-01A	77 years, male, white, stage:iia, alive, 482 days	423.5
TCGA-HZ-7918-01A	72 years, male, white, stage:iib, alive, 969 days	420.0
TCGA-IB-AAUS-01A	84 years, female, white, stage:iib, alive, 225 days	419.6
TCGA-F2-A8YN-01A	76 years, male, white, stage:iia, alive, 517 days	418.3
TCGA-HZ-A49I-01A	77 years, male, white, stage:iib, dead, 308 days	417.0
TCGA-IB-7652-01A	49 years, female, asian, stage:iib, alive, 1116 days	416.6
TCGA-HZ-8317-01A	69 years, female, white, stage:iib, dead, 378 days	411.3
TCGA-IB-7890-01A	73 years, male, stage:ib, dead, 598 days	406.8
TCGA-HZ-A4BH-01A	75 years, male, white, stage:iib, alive, 194 days	405.1
TCGA-LB-A7SX-01A	74 years, female, black or african american, stage:iib, dead, 393 days	404.6
TCGA-HZ-8315-01A	54 years, female, white, stage:iia, dead, 299 days	404.6
TCGA-HV-AA8V-01A	50 years, male, asian, stage:iib, alive, 920 days	398.1
TCGA-XN-A8T3-01A	67 years, male, white, stage:ib, alive, 951 days	397.1
TCGA-2J-AABF-01A	73 years, male, white, stage:iib, dead, 691 days	394.9
TCGA-HZ-8638-01A	84 years, female, white, stage:ia, dead, 151 days	391.5
TCGA-HZ-7919-01A	52 years, female, white, stage:iib, dead, 593 days	388.3
TCGA-US-A779-01A	54 years, female, white, stage:iib, dead, 511 days	386.6
TCGA-IB-A6UF-01A	63 years, male, white, stage:iib, alive, 666 days	380.0
TCGA-US-A77E-01A	73 years, male, white, stage:iib, dead, 430 days	366.8
TCGA-PZ-A5RE-01A	44 years, female, white, stage:iib, dead, 470 days	364.5
TCGA-2J-AAB4-01A	48 years, male, white, stage:iib, alive, 729 days	362.4
TCGA-IB-7646-01A	60 years, male, white, stage:iib, dead, 145 days	357.3
TCGA-IB-A5SS-01A	64 years, female, white, stage:iib, dead, 460 days	349.9
TCGA-HZ-7922-01A	61 years, female, white, stage:iib, alive, 4 days	349.3
TCGA-3A-A9IH-01A	66 years, female, white, stage:ia, alive, 1021 days	346.3
TCGA-HV-A5A5-01A	61 years, female, asian, stage:iib, alive, 289 days	340.5
TCGA-FB-A4P6-01A	54 years, male, white, stage:iib, alive, 767 days	331.9
TCGA-M8-A5N4-01A	48 years, female, stage:iia, alive, 584 days	328.5
TCGA-3A-A9IN-01A	62 years, female, white, stage:ib, alive, 2084 days	325.0
TCGA-RB-AA9M-01A	43 years, male, white, stage:iib, alive, 286 days	321.3
TCGA-XD-AAUL-01A	56 years, male, white, stage:iia, alive, 498 days	320.1
TCGA-HV-A5A6-01A	65 years, female, asian, stage:iib, dead, 2036 days	316.4
TCGA-2L-AAQM-01A	52 years, male, white, stage:iib, alive, 1383 days	306.7
TCGA-3A-A9IL-01A	39 years, female, white, stage:i, alive, 2741 days	303.9
TCGA-IB-AAUU-01A	35 years, male, white, stage:iib, alive, 245 days	297.3
TCGA-HZ-A4BK-01A	72 years, male, white, stage:iib, alive, 657 days	294.5
TCGA-3A-A9IV-01A	59 years, female, white, stage:ib, alive, 1103 days	290.9
TCGA-US-A77G-01A	64 years, male, white, stage:iib, dead, 12 days	287.8
TCGA-3A-A9IR-01A	64 years, female, white, stage:ib, alive, 1542 days	260.3
TCGA-HZ-8003-01A	65 years, female, white, stage:iib, dead, 596 days	240.9
TCGA-3A-A9IS-01A	67 years, male, white, stage:ib, alive, 998 days	206.8
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PANCREATIC CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells. Read more	Antibody HPA050159
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Click images for details